Strain identifier

BacDive ID: 16408

Type strain: Yes

Species: Streptomyces cheonanensis

Strain Designation: VC-A46

Strain history: KCCM 42119 <-- B. K. Hwang VC-A46.

NCBI tax ID(s): 312720 (species)

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General

@ref: 10645

BacDive-ID: 16408

DSM-Number: 41865

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Streptomyces cheonanensis VC-A46 is an aerobe, spore-forming, mesophilic bacterium that was isolated from radish growing soil.

NCBI tax id

  • NCBI tax id: 312720
  • Matching level: species

strain history

@refhistory
10645<- NBRC <- B. K. Hwang; VC-A46
67770KCCM 42119 <-- B. K. Hwang VC-A46.

doi: 10.13145/bacdive16408.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces cheonanensis
  • full scientific name: Streptomyces cheonanensis Kim et al. 2006

@ref: 10645

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces cheonanensis

full scientific name: Streptomyces cheonanensis Kim et al. 2006

strain designation: VC-A46

type strain: yes

Morphology

cell morphology

  • @ref: 31564
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31564
  • production: yes

multimedia

  • @ref: 10645
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41865.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 10645
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10645positivegrowth28mesophilic
31564positivegrowth29mesophilic
31564positiveoptimum29mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepH
31564positivegrowth6.5-8
31564positiveoptimum6.5-8

Physiology and metabolism

oxygen tolerance

  • @ref: 31564
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31564
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
31564NaClpositivegrowth0-7 %
31564NaClpositiveoptimum0-7 %

observation

  • @ref: 31564
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3156415963ribitol+carbon source
3156422599arabinose+carbon source
3156423652dextrin+carbon source
3156428757fructose+carbon source
3156429864mannitol+carbon source
3156428053melibiose+carbon source
3156416634raffinose+carbon source
3156426546rhamnose+carbon source
3156417992sucrose+carbon source
3156417151xylitol+carbon source
3156418222xylose+carbon source
315644853esculin+hydrolysis

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10645radish growing soilCheonanRepublic of KoreaKORAsia
67770Soil of a radish fieldCheonanRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_6878.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_2607;97_3968;98_5064;99_6878&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AY822606
  • Sequence Identity:
  • Total samples: 6887
  • soil counts: 3388
  • aquatic counts: 717
  • animal counts: 1265
  • plant counts: 1517

Safety information

risk assessment

  • @ref: 10645
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 10645
  • description: Streptomyces cheonanensis strain VC-A46 16S ribosomal RNA gene, partial sequence
  • accession: AY822606
  • length: 1483
  • database: ena
  • NCBI tax ID: 312720

GC content

@refGC-contentmethod
1064575.5
6777075.5thermal denaturation, midpoint method (Tm)

External links

@ref: 10645

culture collection no.: DSM 41865, KCCM 42119, NBRC 100940, JCM 14549

straininfo link

  • @ref: 85455
  • straininfo: 289984

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16449460Streptomyces cheonanensis sp. nov., a novel streptomycete with antifungal activity.Kim HJ, Lee SC, Hwang BKInt J Syst Evol Microbiol10.1099/ijs.0.63816-02006Antifungal Agents/*metabolism/pharmacology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fungi/drug effects, Genes, rRNA, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Plant Diseases/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification/*metabolismMetabolism
Phylogeny23584286Streptomyces harbinensis sp. nov., an endophytic, ikarugamycin-producing actinomycete isolated from soybean root [Glycine max (L.) Merr].Liu C, Wang X, Zhao J, Liu Q, Wang L, Guan X, He H, Xiang WInt J Syst Evol Microbiol10.1099/ijs.0.050088-02013Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Lactams/*metabolism, Likelihood Functions, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soybeans/*microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny29177601Streptomyces ginkgonis sp. nov., an endophyte from Ginkgo biloba.Yan X, Li Y, Wang N, Chen Y, Huang LLAntonie Van Leeuwenhoek10.1007/s10482-017-0987-32017Base Composition/genetics, Endophytes/*genetics/physiology, Ginkgo biloba/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptomyces/*genetics/physiology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
10645Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41865)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41865
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31564Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2785428776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
85455Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID289984.1StrainInfo: A central database for resolving microbial strain identifiers