Strain identifier
BacDive ID: 16407
Type strain:
Species: Streptomyces koyangensis
Strain Designation: VK-A60
Strain history: DSM 41864 <-- B. K. Hwang VK-A60.
NCBI tax ID(s): 188770 (species)
General
@ref: 10644
BacDive-ID: 16407
DSM-Number: 41864
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive
description: Streptomyces koyangensis VK-A60 is an aerobe, spore-forming, mesophilic bacterium that was isolated from radish soil.
NCBI tax id
- NCBI tax id: 188770
- Matching level: species
strain history
@ref | history |
---|---|
10644 | <- NBRC <- B. K. Hwang; VK-A60 |
67770 | DSM 41864 <-- B. K. Hwang VK-A60. |
doi: 10.13145/bacdive16407.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces koyangensis
- full scientific name: Streptomyces koyangensis Lee et al. 2005
@ref: 10644
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces koyangensis
full scientific name: Streptomyces koyangensis Lee et al. 2005
strain designation: VK-A60
type strain: yes
Morphology
cell morphology
- @ref: 31268
- gram stain: positive
- motility: no
pigmentation
- @ref: 31268
- production: yes
multimedia
- @ref: 10644
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41864.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
10644 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
10644 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
10644 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
10644 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
10644 | aerobe |
31268 | aerobe |
spore formation
- @ref: 31268
- spore formation: yes
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31268 | 22599 | arabinose | + | carbon source |
31268 | 28757 | fructose | + | carbon source |
31268 | 17234 | glucose | + | carbon source |
31268 | 29864 | mannitol | + | carbon source |
31268 | 18222 | xylose | + | carbon source |
31268 | 4853 | esculin | + | hydrolysis |
31268 | 17632 | nitrate | + | reduction |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
31268 | 16136 | hydrogen sulfide | yes |
67770 | trans-styrylacetic acid | yes |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
10644 | radish soil | Koyang | Republic of Korea | KOR | Asia |
67770 | Soil in a radish field | Koyang | Republic of Korea | KOR | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_720.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_91;97_287;98_384;99_720&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AY079156
- Sequence Identity:
- Total samples: 129
- soil counts: 39
- aquatic counts: 5
- animal counts: 85
Safety information
risk assessment
- @ref: 10644
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 10644
- description: Streptomyces koyangensis strain VK-A60 16S ribosomal RNA gene, partial sequence
- accession: AY079156
- length: 1488
- database: ena
- NCBI tax ID: 188770
Genome sequences
- @ref: 67770
- description: Streptomyces koyangensis VK-A60T
- accession: GCA_003428925
- assembly level: complete
- database: ncbi
- NCBI tax ID: 188770
GC content
@ref | GC-content | method |
---|---|---|
10644 | 67.8 | |
67770 | 67.8 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 10644
culture collection no.: DSM 41864, JCM 14915, KCCM 10555, NBRC 100598, NCIMB 14342
straininfo link
- @ref: 85454
- straininfo: 135139
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 15653884 | Streptomyces koyangensis sp. nov., a novel actinomycete that produces 4-phenyl-3-butenoic acid. | Lee JY, Lee JY, Jung HW, Hwang BK | Int J Syst Evol Microbiol | 10.1099/ijs.0.63168-0 | 2005 | Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids, Monounsaturated/*metabolism, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/ultrastructure, Streptomyces/chemistry/*classification/genetics/isolation & purification/physiology | Genetics |
Phylogeny | 16190619 | Isolation and antifungal activity of 4-phenyl-3-butenoic acid from Streptomyces koyangensis strain VK-A60. | Lee JY, Lee JY, Moon SS, Hwang BK | J Agric Food Chem | 10.1021/jf050957r | 2005 | Culture Media, Conditioned/chemistry, Fatty Acids, Monounsaturated/*isolation & purification/*pharmacology, Fungi/drug effects, Fungicides, Industrial/*pharmacology, Magnetic Resonance Spectroscopy, Mass Spectrometry, Streptomyces/*metabolism | Cultivation |
Phylogeny | 30168790 | Streptomyces venetus sp. nov., an actinomycete with a blue aerial mycelium. | Sujarit K, Kudo T, Ohkuma M, Pathom-Aree W, Lumyong S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002995 | 2018 | Arecaceae/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genes, Bacterial, Glycolipids/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
10644 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41864) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41864 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
31268 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27588 | 28776041 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
85454 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID135139.1 | StrainInfo: A central database for resolving microbial strain identifiers |