General

@ref: 67770

BacDive-ID: 164059

keywords: 16S sequence, Bacteria, mesophilic

description: Deinococcus rubellus JCM 31434 is a mesophilic bacterium that was isolated from Muscle of a fish which had been caught in the Antarctic Ocean .

NCBI tax id

• NCBI tax id: 1889240
• Matching level: species

strain history

• @ref: 67770
• history: M. K. Kim; Dept. of Bio & Environ. Technol., Seoul Women's Univ., South Korea; Ant6.

doi: 10.13145/bacdive164059.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/deinococcota
• domain: Bacteria
• phylum: Deinococcota
• class: Deinococci
• order: Deinococcales
• family: Deinococcaceae
• genus: Deinococcus
• species: Deinococcus rubellus
• full scientific name: Deinococcus rubellus Choi et al. 2016

@ref: 67770

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Deinococcales

family: Deinococcaceae

genus: Deinococcus

species: Deinococcus rubellus

full scientific name: Deinococcus rubellus Choi et al.

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 25
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Muscle of a fish which had been caught in the Antarctic Ocean (64°30'S / 90°00'E)
• latitude: -64.5
• longitude: 90

Sequence information

16S sequences

• @ref: 67770
• description: Deinococcus rubellus strain Ant6 16S ribosomal RNA gene, partial sequence
• accession: KX036987
• length: 1447
• database: ena
• NCBI tax ID: 1889240

GC content

• @ref: 67770
• GC-content: 62
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 31434, KEMB 9004-169

literature

• topic: Phylogeny
• Pubmed-ID: 27888462
• title: Deinococcus rubellus sp. nov., bacteria isolated from the muscle of antarctic fish.
• authors: Choi SG, Jeon SH, Lee JB, Joo ES, Lim S, Jung HY, Kim MK
• journal: J Microbiol
• DOI: 10.1007/s12275-016-6390-3
• year: 2016
• mesh: Animals, Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial, DNA, Ribosomal, Deinococcus/*classification/genetics/*isolation & purification/radiation effects, Fatty Acids/chemistry, Fishes/anatomy & histology/*microbiology, Gamma Rays, Genes, rRNA, Glycolipids/chemistry, Muscles/*microbiology, Nucleic Acid Hybridization, Oceans and Seas, Phenotype, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA
• topic2: Phenotype

Reference