Strain identifier
BacDive ID: 164056
Type strain: 
Species: Abyssisolibacter fermentans
Strain history: W. Kim; Korea Inst. of Ocean Sci. & Technol., South Korea; MCWD3.
NCBI tax ID(s): 1766203 (species)
General
@ref: 67770
BacDive-ID: 164056
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Abyssisolibacter fermentans JCM 31420 is a mesophilic bacterium that was isolated from Deep sea sediment in Ulleung Basin.
NCBI tax id
- NCBI tax id: 1766203
- Matching level: species
strain history
- @ref: 67770
- history: W. Kim; Korea Inst. of Ocean Sci. & Technol., South Korea; MCWD3.
doi: 10.13145/bacdive164056.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Abyssisolibacter
- species: Abyssisolibacter fermentans
- full scientific name: Abyssisolibacter fermentans Kim et al. 2016
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Abyssisolibacter
species: Abyssisolibacter fermentans
full scientific name: Abyssisolibacter fermentans Kim et al.
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Deep sea sediment in Ulleung Basin
taxonmaps
- @ref: 69479
- File name: preview.99_4710.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_486;96_2337;97_2842;98_3533;99_4710&stattab=map
- Last taxonomy: Abyssisolibacter fermentans subclade
- 16S sequence: KU510224
- Sequence Identity:
- Total samples: 1649
- soil counts: 147
- aquatic counts: 317
- animal counts: 1090
- plant counts: 95
Sequence information
16S sequences
- @ref: 67770
- description: Abyssisolibacter fermentans 16S ribosomal RNA gene, partial sequence
- accession: KU510224
- length: 1364
- database: ena
- NCBI tax ID: 1766203
Genome sequences
- @ref: 67770
- description: Abyssisolibacter fermentans MCWD3
- accession: GCA_001559865
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1766203
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 59.764 | no |
| gram-positive | yes | 70.973 | no |
| anaerobic | yes | 99.19 | no |
| aerobic | no | 97.192 | no |
| halophile | no | 86.879 | no |
| spore-forming | yes | 94.85 | no |
| thermophile | no | 95.516 | yes |
| glucose-util | yes | 86.877 | no |
| motile | yes | 84.281 | no |
| glucose-ferment | no | 50.971 | no |
External links
@ref: 67770
culture collection no.: JCM 31420, KCTC 15524
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |