Strain identifier
BacDive ID: 164043
Type strain: 
Species: Faecalimonas umbilicata
Strain Designation: TSAH33
Strain history: <- M. Sakamoto, RIKEN BioResource Center, Tsukuba, Japan; TSAH33
NCBI tax ID(s): 1912855 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 164043
DSM-Number: 103427
keywords: 16S sequence, Bacteria, mesophilic
description: Faecalimonas umbilicata TSAH33 is a mesophilic bacterium that was isolated from Feces of a man in the forties.
NCBI tax id
- NCBI tax id: 1912855
- Matching level: species
strain history
| @ref | history |
|---|---|
| 67770 | M. Sakamoto; RIKEN BRC-JCM, Japan; TSAH33. |
| 68996 | <- M. Sakamoto, RIKEN BioResource Center, Tsukuba, Japan; TSAH33 |
doi: 10.13145/bacdive164043.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Faecalimonas
- species: Faecalimonas umbilicata
- full scientific name: Faecalimonas umbilicata Sakamoto et al. 2017
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Lachnospiraceae
genus: Faecalimonas
species: Faecalimonas umbilicata
full scientific name: Faecalimonas umbilicata Sakamoto et al. 2017
strain designation: TSAH33
type strain: no
Culture and growth conditions
culture medium
- @ref: 68996
- name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium104.pdf
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 67770 | positive | growth | 37 |
| 68996 | positive | growth | 37 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 67770 | Feces of a man in the forties | ||||
| 68996 | Feces of man | Tsukuba, Ibaraki | Japan | JPN | Asia |
taxonmaps
- @ref: 69479
- File name: preview.99_4314.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_1016;97_1183;98_1414;99_4314&stattab=map
- Last taxonomy: Faecalimonas umbilicata subclade
- 16S sequence: LC192832
- Sequence Identity:
- Total samples: 53459
- soil counts: 369
- aquatic counts: 856
- animal counts: 51940
- plant counts: 294
Safety information
risk assessment
- @ref: 68996
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 67770
- description: Faecalimonas umbilicata gene for 16S ribosomal RNA, partial sequence, strain: TSAH33
- accession: LC192832
- length: 1492
- database: nuccore
- NCBI tax ID: 1912855
GC content
- @ref: 67770
- GC-content: 45.5
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 31370, DSM 103427
straininfo link
- @ref: 114150
- straininfo: 396619
literature
- topic: Phylogeny
- Pubmed-ID: 28556772
- title: Faecalimonas umbilicata gen. nov., sp. nov., isolated from human faeces, and reclassification of Eubacterium contortum, Eubacterium fissicatena and Clostridium oroticum as Faecalicatena contorta gen. nov., comb. nov., Faecalicatena fissicatena comb. nov. and Faecalicatena orotica comb. nov.
- authors: Sakamoto M, Iino T, Ohkuma M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001790
- year: 2017
- mesh: Bacterial Typing Techniques, Base Composition, Clostridiales/*classification/genetics/isolation & purification, Clostridium/classification, DNA, Bacterial/genetics, Eubacterium/classification, Fatty Acids/chemistry, Feces/*microbiology, Genes, Bacterial, Humans, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 68996 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103427 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103427) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 114150 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396619.1 |