Strain identifier

BacDive ID: 16404

Type strain: Yes

Species: Streptomyces sparsus

Strain history: W.-J. Li YIM 90018.

NCBI tax ID(s): 297584 (species)

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General

@ref: 10640

BacDive-ID: 16404

DSM-Number: 41858

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces sparsus DSM 41858 is a mesophilic bacterium that was isolated from saline and alkaline soil sample.

NCBI tax id

  • NCBI tax id: 297584
  • Matching level: species

strain history

@refhistory
10640<- J. F. Imhoff <- YIM
67770W.-J. Li YIM 90018.

doi: 10.13145/bacdive16404.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces sparsus
  • full scientific name: Streptomyces sparsus Jiang et al. 2011

  • synonyms

    • @ref: 20215
    • synonym: Streptomyces cinnamoneus subsp. sparsus

@ref: 10640

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces sparsus

full scientific name: Streptomyces sparsus Jiang et al. 2011

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 10640
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10640positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H6), MK-9

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10640saline and alkaline soil sampleQinghai ProvinceChinaCHNAsia
67770Saline and alkaline soilQinghai ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Alkaline
#Condition#Saline

Safety information

risk assessment

  • @ref: 10640
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 10640
  • description: Streptomyces sparsus partial 16S rRNA gene, strain YIM 90018
  • accession: AJ849545
  • length: 1466
  • database: ena
  • NCBI tax ID: 297584

GC content

  • @ref: 10640
  • GC-content: 71.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 10640

culture collection no.: DSM 41858, CCTCC AA 204019, YIM 90018, JCM 19151

straininfo link

  • @ref: 85451
  • straininfo: 297704

literature

  • topic: Phylogeny
  • Pubmed-ID: 20693361
  • title: Streptomyces sparsus sp. nov., isolated from a saline and alkaline soil.
  • authors: Jiang Y, Cao YR, Wiese J, Tang SK, Xu LH, Imhoff JF, Jiang CL
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.020669-0
  • year: 2010
  • mesh: Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
10640Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41858)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41858
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
85451Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297704.1StrainInfo: A central database for resolving microbial strain identifiers