Strain identifier

BacDive ID: 16402

Type strain: Yes

Species: Streptomyces glaucescens

Strain Designation: CZA14

Strain history: DSM 41856 <-- P. R. Meyers CZA14 <-- M. le Roes.

NCBI tax ID(s): 291370 (species)

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General

@ref: 10638

BacDive-ID: 16402

DSM-Number: 41856

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Streptomyces glaucescens CZA14 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 291370
  • Matching level: species

strain history

@refhistory
10638<- P. R. Meyers; CZA14 <- M. Le Roes
67770DSM 41856 <-- P. R. Meyers CZA14 <-- M. le Roes.

doi: 10.13145/bacdive16402.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces glaucescens
  • full scientific name: Streptomyces glaucescens (Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinomyces glaucescens
    20215Streptomyces pharetrae

@ref: 10638

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces pharetrae

full scientific name: Streptomyces pharetrae le Roes and Meyers 2005

strain designation: CZA14

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10638GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10638ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10638STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
10638CZAPEK PEPTONE AGAR (DSMZ Medium 83)yeshttps://mediadive.dsmz.de/medium/83Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10638positivegrowth28mesophilic
67770positivegrowth28mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10638soilWorcesterSouth AfricaZAFAfrica
67770SoilWorcester, the Western Cape ProvinceSouth AfricaZAFAfrica

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 10638
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Streptomyces pharetrae CZA14 16S ribosomal RNA gene, partial sequence
  • accession: AY699792
  • length: 1427
  • database: ena
  • NCBI tax ID: 1144883

Genome sequences

  • @ref: 67770
  • description: Streptomyces pharetrae CZA14
  • accession: GCA_002128465
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1144883

GC content

  • @ref: 67770
  • GC-content: 76
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno98.337no
gram-positiveyes87.047no
anaerobicno99.015no
halophileno94.755no
spore-formingyes95.62no
glucose-utilyes90.712no
aerobicyes94.182no
thermophileno98.35no
motileno94.747no
glucose-fermentno89.419no

External links

@ref: 10638

culture collection no.: DSM 41856, JCM 13860, NRRL B-24333

straininfo link

  • @ref: 85449
  • straininfo: 281469

literature

  • topic: Phylogeny
  • Pubmed-ID: 16104349
  • title: Streptomyces pharetrae sp. nov., isolated from soil from the semi-arid Karoo region.
  • authors: le Roes M, Meyers PR
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2005.03.006
  • year: 2005
  • mesh: Antibiosis, Bacterial Typing Techniques, DNA, Ribosomal, *Desert Climate, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, South Africa, Streptomyces/*classification/genetics/*isolation & purification/physiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10638Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41856)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41856
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
85449Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID281469.1StrainInfo: A central database for resolving microbial strain identifiers