Strain identifier

BacDive ID: 1640

Type strain: Yes

Species: Bartonella coopersplainsensis

Strain Designation: AUST/NH20

Strain history: CIP <- 2005, P.E. Fournier, CNRS UMR 6020, Marseille, France: strain AUST/NH20

NCBI tax ID(s): 481137 (species)

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General

@ref: 17242

BacDive-ID: 1640

DSM-Number: 23499

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, animal pathogen

description: Bartonella coopersplainsensis AUST/NH20 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from blood of rattus leucopus.

NCBI tax id

  • NCBI tax id: 481137
  • Matching level: species

strain history

@refhistory
401112005, P.E. Fournier, CNRS UMR 6020, Marseille, France: strain AUST/NH20
17242<- CCUG <- P.-E. Fournier; AUST/NH20
118742CIP <- 2005, P.E. Fournier, CNRS UMR 6020, Marseille, France: strain AUST/NH20

doi: 10.13145/bacdive1640.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Bartonellaceae
  • genus: Bartonella
  • species: Bartonella coopersplainsensis
  • full scientific name: Bartonella coopersplainsensis Gundi et al. 2009

@ref: 17242

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Bartonellaceae

genus: Bartonella

species: Bartonella coopersplainsensis

full scientific name: Bartonella coopersplainsensis Gundi et al. 2009

strain designation: AUST/NH20

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthmotilitycell shape
23361negative1-2 µm0.5 µmno
29354negative1.6 µm0.7 µmyesrod-shaped
118742negativenorod-shaped

colony morphology

@reftype of hemolysiscolony sizecolony colorcolony shapeincubation periodmedium used
17242gamma
233610.5 mmwhiteirregular20 daysColumbia agar with 5 % sheep blood
594554 days
118742

pigmentation

  • @ref: 29354
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17242COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23361Columbia agar with 5 % sheep bloodyes
40111MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
118742CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
17242positivegrowth37mesophilic
23361positivegrowth37mesophilic
29354positivegrowth15-37
29354positiveoptimum30mesophilic
40111positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
29354positivegrowth05-10alkaliphile
29354positiveoptimum8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
17242microaerophile
29354facultative anaerobe
59455microaerophile
118742facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2935418403L-arabitol+carbon source
2935428757fructose+carbon source
2935433984fucose+carbon source
2935417234glucose+carbon source
2935417716lactose+carbon source
2935429864mannitol+carbon source
2935417272propionate+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
6837115443inulin-builds acid from
6837128053melibiose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
11874217632nitrate-reduction
11874216301nitrite-reduction
6837717634D-glucose-builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837717992sucrose-builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantis sensitive
23361471744imipenemyesyes
2336128001vancomycinyesyes
2336122507aminoglycoside antibioticyesyes
2336150845doxycyclineyesyes
2336125105macrolide antibioticyesyes
2336128077rifampicinyesyes

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
11874235581indoleno

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
17242catalase-1.11.1.6
17242cytochrome-c oxidase-1.9.3.1
29354acid phosphatase+3.1.3.2
29354catalase+1.11.1.6
29354cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
68377tryptophan deaminase-4.1.99.1
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
118742oxidase-
118742alcohol dehydrogenase-1.1.1.1
118742catalase-1.11.1.6
118742lysine decarboxylase-4.1.1.18
118742ornithine decarboxylase-4.1.1.17
118742urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118742-----++-+-----------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
118742---------+/-+/-+/-+/---------+/---+/---+/-+/--+/-+/--+/------+/----------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
17242----------+/---
17242-----------+/--

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentisolation date
17242blood of rattus leucopusRattus leucopusQueensland, Coopers PlainAustraliaAUSAustralia and Oceania
59455Rattus leucopus bloodAustraliaAUSAustralia and Oceania
118742Animal, Blood, Rattus leucopusQueenslandAustraliaAUSAustralia and Oceania2000

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body Product#Fluids#Blood

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
17242yes2Risk group (German classification)
1187422Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bartonella coopersplainsensis strain AUST/NH20 16S-23S ribosomal RNA intergenic spacer, partial sequenceEU1117701541ena481137
17242Bartonella coopersplainsensis strain AUST/NH20 16S ribosomal RNA gene, partial sequenceEU1117591411ena481137

GC content

  • @ref: 29354
  • GC-content: 65

External links

@ref: 17242

culture collection no.: DSM 23499, CCUG 52174, CIP 109064, CSUR B619

straininfo link

  • @ref: 71287
  • straininfo: 364822

literature

  • topic: Phylogeny
  • Pubmed-ID: 19628592
  • title: Bartonella rattaustraliani sp. nov., Bartonella queenslandensis sp. nov. and Bartonella coopersplainsensis sp. nov., identified in Australian rats.
  • authors: Gundi VA, Taylor C, Raoult D, La Scola B
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.002865-0
  • year: 2009
  • mesh: Animals, Bacterial Proteins/genetics, Bartonella/*classification/genetics/*isolation & purification, Blood/microbiology, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rodentia/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17242Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23499)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23499
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23361Vijay A. K. B. Gundi, Carmel Taylor, Didier Raoult, Bernard La Scola10.1099/ijs.0.002865-0Bartonella rattaustraliani sp. nov., Bartonella queenslandensis sp. nov. and Bartonella coopersplainsensis sp. nov., identified in Australian ratsIJSEM 59: 2956-2961 200919628592
29354Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604125766
40111Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6764
59455Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 52174)https://www.ccug.se/strain?id=52174
68371Automatically annotated from API 50CH acid
68377Automatically annotated from API NH
68382Automatically annotated from API zym
71287Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID364822.1StrainInfo: A central database for resolving microbial strain identifiers
118742Curators of the CIPCollection of Institut Pasteur (CIP 109064)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109064