Strain identifier

BacDive ID: 164

Type strain: No

Species: Actinomyces gerencseriae

Strain Designation: 8/46-47

Strain history: CIP <- 1988, ATCC <- M.A. Gerencser: strain WVU, Actinomyces israelii <- P. Holm: strain 8/46-47

NCBI tax ID(s): 29317 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 10955

BacDive-ID: 164

DSM-Number: 43322

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped

description: Actinomyces gerencseriae 8/46-47 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human actinomycosis.

NCBI tax id

  • NCBI tax id: 29317
  • Matching level: species

strain history

@refhistory
10955<- M.A. Gerencser, WVU 307 <- P. Holm, 8/46-47
119605CIP <- 1988, ATCC <- M.A. Gerencser: strain WVU, Actinomyces israelii <- P. Holm: strain 8/46-47

doi: 10.13145/bacdive164.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Actinomyces
  • species: Actinomyces gerencseriae
  • full scientific name: Actinomyces gerencseriae Johnson et al. 1990

@ref: 10955

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Actinomyces

species: Actinomyces gerencseriae

full scientific name: Actinomyces sp.

strain designation: 8/46-47

type strain: no

Morphology

cell morphology

  • @ref: 119605
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 119605

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10955BHI/3 MEDIUM (DSMZ Medium 218)yeshttps://mediadive.dsmz.de/medium/218Name: BHI/3 MEDIUM (DSMZ Medium 218) Composition: Brain heart infusion 37.0 g/l Casein hydrolysate 10.0 g/l Starch 1.0 g/l Distilled water
34232MEDIUM 258 - for Actinomyces gerencseriaeyesDistilled water make up to (1000.000 ml);Glucose (5.000 g);Yeast extract(5.000 g);Brain heart infusion agar (52.000 g);Casein hydrolysate acid hydrolysed vitamine-free (10.000 g)
119605CIP Medium 7yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=7

culture temp

@refgrowthtypetemperaturerange
10955positivegrowth37mesophilic
34232positivegrowth37mesophilic
119605positivegrowth30-41
119605nogrowth10psychrophilic
119605nogrowth25mesophilic
119605nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
10955anaerobe
10955microaerophile

halophily

@refsaltgrowthtested relationconcentration
119605NaClpositivegrowth0-6 %
119605NaClnogrowth8 %
119605NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371melibiose-builds acid from28053
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
119605citrate-carbon source16947
119605esculin+hydrolysis4853
119605hippurate-hydrolysis606565
119605nitrate-reduction17632
119605nitrite-reduction16301
119605nitrate+respiration17632
68379nitrate+reduction17632
68379esculin+hydrolysis4853
68379urea-hydrolysis16199
68379gelatin-hydrolysis5291
68379D-glucose+fermentation17634
68379D-ribose-fermentation16988
68379D-xylose+fermentation65327
68379D-mannitol-fermentation16899
68379maltose+fermentation17306
68379lactose+fermentation17716
68379sucrose+fermentation17992
68379glycogen-fermentation28087
68380urea-hydrolysis16199
68380arginine-hydrolysis29016
68380D-mannose-fermentation16024
68380raffinose-fermentation16634
68380L-glutamate-degradation29985
68380nitrate+reduction17632
68380tryptophan-energy source27897
68381arginine-hydrolysis29016
68381D-ribose-builds acid from16988
68381D-mannitol-builds acid from16899
68381sorbitol-builds acid from30911
68381lactose+builds acid from17716
68381trehalose-builds acid from27082
68381raffinose-builds acid from16634
68381sucrose+builds acid from17992
68381L-arabinose-builds acid from30849
68381D-arabitol-builds acid from18333
68381alpha-cyclodextrin-builds acid from40585
68381hippurate-hydrolysis606565
68381glycogen-builds acid from28087
68381pullulan+builds acid from27941
68381maltose+builds acid from17306
68381melibiose-builds acid from28053
68381melezitose-builds acid from6731
68381methyl beta-D-glucopyranoside-builds acid from320055
68381D-tagatose-builds acid from16443
68381urea-hydrolysis16199

metabolite production

@refChebi-IDmetaboliteproduction
11960535581indoleno
6838035581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6838115688acetoin-
6838035581indole-
11960515688acetoin+
11960517234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382alkaline phosphatase-3.1.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68379catalase-1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
119605oxidase-
119605beta-galactosidase+3.2.1.23
119605alcohol dehydrogenase-1.1.1.1
119605gelatinase-
119605amylase-
119605DNase-
119605caseinase-3.4.21.50
119605catalase-1.11.1.6
119605tween esterase-
119605gamma-glutamyltransferase-2.3.2.2
119605lysine decarboxylase-4.1.1.18
119605ornithine decarboxylase-4.1.1.17
119605phenylalanine ammonia-lyase-4.3.1.24
119605tryptophan deaminase-
119605urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    51270C10:01.710
    51270C12:06.512
    51270C14:09.114
    51270C16:038.116
    51270C18:06.218
    51270C16:1 ω9c215.774
    51270C18:1 ω9c33.217.769
    51270C18:2 ω6,9c/C18:0 ANTE3.217.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
51270+-------+---+-+-+++--

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
51270-----+----+--+-++---
119605--++-+-------+-++---

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
51270-----------++------------+---+-+------------------
119605------------------------++-----------++----------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
51270---+--+-------+--+++++-++++-+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
51270-++------+--+----++-----++------

Isolation, sampling and environmental information

isolation

@refsample type
10955human actinomycosis
51270Human actinomycosis,cervicofacial
119605Human, Cervicofacial actinomycosis

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Human
#Infection#Patient
#Host#Microbial#Bacteria

Safety information

risk assessment

  • @ref: 119605
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218A.israelii serotype 2 16S rRNA (part 1 of 4)X67453244ena1659
20218A.israelii serotype 2 16S rRNA (part 2 of 4)X6745495ena1659
20218A.israelii serotype 2 16S rRNA (part 3 of 4)X67455291ena1659
20218A.israelii serotype 2 16S rRNA (part 4 of 4)X6745695ena1659

External links

@ref: 10955

culture collection no.: DSM 43322, ATCC 29322, CCUG 32939, WVU 307, CIP 103260

straininfo link

  • @ref: 69846
  • straininfo: 45853

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10955Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43322)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43322
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34232Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15038
51270Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 32939)https://www.ccug.se/strain?id=32939
68371Automatically annotated from API 50CH acid
68379Automatically annotated from API Coryne
68380Automatically annotated from API rID32A
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69846Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45853.1StrainInfo: A central database for resolving microbial strain identifiers
119605Curators of the CIPCollection of Institut Pasteur (CIP 103260)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103260