Strain identifier
BacDive ID: 164
Type strain:
Species: Actinomyces gerencseriae
Strain Designation: 8/46-47
Strain history: CIP <- 1988, ATCC <- M.A. Gerencser: strain WVU, Actinomyces israelii <- P. Holm: strain 8/46-47
NCBI tax ID(s): 29317 (species)
General
@ref: 10955
BacDive-ID: 164
DSM-Number: 43322
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped
description: Actinomyces gerencseriae 8/46-47 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human actinomycosis.
NCBI tax id
- NCBI tax id: 29317
- Matching level: species
strain history
@ref | history |
---|---|
10955 | <- M.A. Gerencser, WVU 307 <- P. Holm, 8/46-47 |
119605 | CIP <- 1988, ATCC <- M.A. Gerencser: strain WVU, Actinomyces israelii <- P. Holm: strain 8/46-47 |
doi: 10.13145/bacdive164.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Actinomycetales
- family: Actinomycetaceae
- genus: Actinomyces
- species: Actinomyces gerencseriae
- full scientific name: Actinomyces gerencseriae Johnson et al. 1990
@ref: 10955
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinomycetaceae
genus: Actinomyces
species: Actinomyces gerencseriae
full scientific name: Actinomyces sp.
strain designation: 8/46-47
type strain: no
Morphology
cell morphology
- @ref: 119605
- gram stain: positive
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 119605
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
10955 | BHI/3 MEDIUM (DSMZ Medium 218) | yes | https://mediadive.dsmz.de/medium/218 | Name: BHI/3 MEDIUM (DSMZ Medium 218) Composition: Brain heart infusion 37.0 g/l Casein hydrolysate 10.0 g/l Starch 1.0 g/l Distilled water |
34232 | MEDIUM 258 - for Actinomyces gerencseriae | yes | Distilled water make up to (1000.000 ml);Glucose (5.000 g);Yeast extract(5.000 g);Brain heart infusion agar (52.000 g);Casein hydrolysate acid hydrolysed vitamine-free (10.000 g) | |
119605 | CIP Medium 7 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=7 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
10955 | positive | growth | 37 | mesophilic |
34232 | positive | growth | 37 | mesophilic |
119605 | positive | growth | 30-41 | |
119605 | no | growth | 10 | psychrophilic |
119605 | no | growth | 25 | mesophilic |
119605 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
10955 | anaerobe |
10955 | microaerophile |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
119605 | NaCl | positive | growth | 0-6 % |
119605 | NaCl | no | growth | 8 % |
119605 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
119605 | citrate | - | carbon source | 16947 |
119605 | esculin | + | hydrolysis | 4853 |
119605 | hippurate | - | hydrolysis | 606565 |
119605 | nitrate | - | reduction | 17632 |
119605 | nitrite | - | reduction | 16301 |
119605 | nitrate | + | respiration | 17632 |
68379 | nitrate | + | reduction | 17632 |
68379 | esculin | + | hydrolysis | 4853 |
68379 | urea | - | hydrolysis | 16199 |
68379 | gelatin | - | hydrolysis | 5291 |
68379 | D-glucose | + | fermentation | 17634 |
68379 | D-ribose | - | fermentation | 16988 |
68379 | D-xylose | + | fermentation | 65327 |
68379 | D-mannitol | - | fermentation | 16899 |
68379 | maltose | + | fermentation | 17306 |
68379 | lactose | + | fermentation | 17716 |
68379 | sucrose | + | fermentation | 17992 |
68379 | glycogen | - | fermentation | 28087 |
68380 | urea | - | hydrolysis | 16199 |
68380 | arginine | - | hydrolysis | 29016 |
68380 | D-mannose | - | fermentation | 16024 |
68380 | raffinose | - | fermentation | 16634 |
68380 | L-glutamate | - | degradation | 29985 |
68380 | nitrate | + | reduction | 17632 |
68380 | tryptophan | - | energy source | 27897 |
68381 | arginine | - | hydrolysis | 29016 |
68381 | D-ribose | - | builds acid from | 16988 |
68381 | D-mannitol | - | builds acid from | 16899 |
68381 | sorbitol | - | builds acid from | 30911 |
68381 | lactose | + | builds acid from | 17716 |
68381 | trehalose | - | builds acid from | 27082 |
68381 | raffinose | - | builds acid from | 16634 |
68381 | sucrose | + | builds acid from | 17992 |
68381 | L-arabinose | - | builds acid from | 30849 |
68381 | D-arabitol | - | builds acid from | 18333 |
68381 | alpha-cyclodextrin | - | builds acid from | 40585 |
68381 | hippurate | - | hydrolysis | 606565 |
68381 | glycogen | - | builds acid from | 28087 |
68381 | pullulan | + | builds acid from | 27941 |
68381 | maltose | + | builds acid from | 17306 |
68381 | melibiose | - | builds acid from | 28053 |
68381 | melezitose | - | builds acid from | 6731 |
68381 | methyl beta-D-glucopyranoside | - | builds acid from | 320055 |
68381 | D-tagatose | - | builds acid from | 16443 |
68381 | urea | - | hydrolysis | 16199 |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
119605 | 35581 | indole | no |
68380 | 35581 | indole | no |
68381 | 15688 | acetoin | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68381 | 15688 | acetoin | - | ||
68380 | 35581 | indole | - | ||
119605 | 15688 | acetoin | + | ||
119605 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68381 | urease | - | 3.5.1.5 |
68381 | beta-mannosidase | - | 3.2.1.25 |
68381 | glycyl tryptophan arylamidase | - | |
68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | beta-galactosidase | + | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | |
68381 | alkaline phosphatase | - | 3.1.3.1 |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | + | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
68380 | serine arylamidase | + | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | + | |
68380 | glycin arylamidase | + | |
68380 | alanine arylamidase | + | 3.4.11.2 |
68380 | tyrosine arylamidase | + | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | + | 3.4.11.1 |
68380 | phenylalanine arylamidase | + | |
68380 | leucyl glycin arylamidase | + | 3.4.11.1 |
68380 | proline-arylamidase | + | 3.4.11.5 |
68380 | L-arginine arylamidase | + | |
68380 | alkaline phosphatase | - | 3.1.3.1 |
68380 | tryptophan deaminase | - | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | + | 3.2.1.21 |
68380 | alpha-glucosidase | - | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | + | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
68379 | catalase | - | 1.11.1.6 |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | - | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
119605 | oxidase | - | |
119605 | beta-galactosidase | + | 3.2.1.23 |
119605 | alcohol dehydrogenase | - | 1.1.1.1 |
119605 | gelatinase | - | |
119605 | amylase | - | |
119605 | DNase | - | |
119605 | caseinase | - | 3.4.21.50 |
119605 | catalase | - | 1.11.1.6 |
119605 | tween esterase | - | |
119605 | gamma-glutamyltransferase | - | 2.3.2.2 |
119605 | lysine decarboxylase | - | 4.1.1.18 |
119605 | ornithine decarboxylase | - | 4.1.1.17 |
119605 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
119605 | tryptophan deaminase | - | |
119605 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 51270 C10:0 1.7 10 51270 C12:0 6.5 12 51270 C14:0 9.1 14 51270 C16:0 38.1 16 51270 C18:0 6.2 18 51270 C16:1 ω9c 2 15.774 51270 C18:1 ω9c 33.2 17.769 51270 C18:2 ω6,9c/C18:0 ANTE 3.2 17.724 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
51270 | + | - | - | - | - | - | - | - | + | - | - | - | + | - | + | - | + | + | + | - | - |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
51270 | - | - | - | - | - | + | - | - | - | - | + | - | - | + | - | + | + | - | - | - |
119605 | - | - | + | + | - | + | - | - | - | - | - | - | - | + | - | + | + | - | - | - |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
51270 | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
119605 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
51270 | - | - | - | + | - | - | + | - | - | - | - | - | - | - | + | - | - | + | + | + | + | + | - | + | + | + | + | - | + |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
51270 | - | + | + | - | - | - | - | - | - | + | - | - | + | - | - | - | - | + | + | - | - | - | - | - | + | + | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
10955 | human actinomycosis |
51270 | Human actinomycosis,cervicofacial |
119605 | Human, Cervicofacial actinomycosis |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Disease | |
#Host | #Human | |
#Infection | #Patient | |
#Host | #Microbial | #Bacteria |
Safety information
risk assessment
- @ref: 119605
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | A.israelii serotype 2 16S rRNA (part 1 of 4) | X67453 | 244 | ena | 1659 |
20218 | A.israelii serotype 2 16S rRNA (part 2 of 4) | X67454 | 95 | ena | 1659 |
20218 | A.israelii serotype 2 16S rRNA (part 3 of 4) | X67455 | 291 | ena | 1659 |
20218 | A.israelii serotype 2 16S rRNA (part 4 of 4) | X67456 | 95 | ena | 1659 |
External links
@ref: 10955
culture collection no.: DSM 43322, ATCC 29322, CCUG 32939, WVU 307, CIP 103260
straininfo link
- @ref: 69846
- straininfo: 45853
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
10955 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43322) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43322 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
34232 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15038 | ||||
51270 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 32939) | https://www.ccug.se/strain?id=32939 | |||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68380 | Automatically annotated from API rID32A | |||||
68381 | Automatically annotated from API rID32STR | |||||
68382 | Automatically annotated from API zym | |||||
69846 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45853.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119605 | Curators of the CIP | Collection of Institut Pasteur (CIP 103260) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103260 |