Strain identifier
BacDive ID: 163973
Type strain: 
Species: Arthrobacter sp.
Strain history: W. Iwasaki; Dept. of Biol. Sci., Grad. Sch. of Sci., Univ. of Tokyo, Japan; Hiyo6.
NCBI tax ID(s): 1667 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163973
keywords: genome sequence, Bacteria, mesophilic
description: Arthrobacter sp. JCM 31234 is a mesophilic bacterium that was isolated from Soil at Hiyoriyama, affected by the 2011 Great East Japan Earthquake tsunami.
NCBI tax id
- NCBI tax id: 1667
- Matching level: species
strain history
- @ref: 67770
- history: W. Iwasaki; Dept. of Biol. Sci., Grad. Sch. of Sci., Univ. of Tokyo, Japan; Hiyo6.
doi: 10.13145/bacdive163973.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter sp.
- full scientific name: Arthrobacter Conn and Dimmick 1947 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter sp.
full scientific name: Arthrobacter sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil at Hiyoriyama, affected by the 2011 Great East Japan Earthquake tsunami
- geographic location: Sendai, Miyagi Pref.
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
Genome sequences
- @ref: 67770
- description: Arthrobacter sp. Hiyo6
- accession: GCA_001263635
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1588022
GC content
- @ref: 67770
- GC-content: 63.3
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 90.551 | no |
| flagellated | no | 97.624 | no |
| gram-positive | yes | 89.796 | no |
| anaerobic | no | 98.151 | no |
| aerobic | yes | 90.702 | no |
| halophile | no | 82.518 | no |
| spore-forming | no | 96.339 | no |
| thermophile | no | 99.125 | yes |
| glucose-util | yes | 85.184 | no |
| glucose-ferment | no | 79.631 | no |
External links
@ref: 67770
culture collection no.: JCM 31234
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |