Strain identifier

BacDive ID: 16397

Type strain: Yes

Species: Streptomyces seoulensis

Strain Designation: IMSNU-1

Strain history: CIP <- 1997, Sa-Ouk Kang, Seoul Nat. Univ., Seoul, Korea: strain IMSNU-1 <- H. Lee

NCBI tax ID(s): 73044 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 10623

BacDive-ID: 16397

DSM-Number: 41840

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces seoulensis IMSNU-1 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 73044
  • Matching level: species

strain history

@refhistory
10623<- KCTC <- S. Kang
67770S.-O. Kang IMSNU-1.
67771<- S. Kang
122563CIP <- 1997, Sa-Ouk Kang, Seoul Nat. Univ., Seoul, Korea: strain IMSNU-1 <- H. Lee

doi: 10.13145/bacdive16397.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces seoulensis
  • full scientific name: Streptomyces seoulensis Chun et al. 1997

@ref: 10623

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces seoulensis

full scientific name: Streptomyces seoulensis Chun et al. 1997 emend. Nouioui et al. 2018

strain designation: IMSNU-1

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
67771positive
69480positive100
122563positiverod-shapedno

colony morphology

  • @ref: 122563

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10623GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
39257MEDIUM 129 - for Pseudonocardia, Nocardia, Skermania and Streptomyces seoulensis, Streptomyces stramineusyesDistilled water make up to (1000.000 ml);Agar (20.000 g);Glucose (10.000g);Yeast extract (1.000 g);Beef extract (1.000 g);Casamino acids (2.000 g)
10623ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10623STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
10623GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
122563CIP Medium 129yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=129

culture temp

@refgrowthtypetemperaturerange
10623positivegrowth28mesophilic
39257positivegrowth30mesophilic
67770positivegrowth28mesophilic
67771positivegrowth28mesophilic
122563positivegrowth25-37mesophilic
122563nogrowth10psychrophilic
122563nogrowth41thermophilic
122563nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
67771aerobe
122563obligate aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

halophily

@refsaltgrowthtested relationconcentration
122563NaClpositivegrowth0-2 %
122563NaClnogrowth4 %
122563NaClnogrowth6 %
122563NaClnogrowth8 %
122563NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371salicin-builds acid from17814
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
122563citrate-carbon source16947
122563esculin-hydrolysis4853
122563hippurate-hydrolysis606565
122563nitrate-reduction17632
122563nitrite-reduction16301
122563nitrate-respiration17632

metabolite production

  • @ref: 122563
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12256315688acetoin-
12256317234glucose-

enzymes

@refvalueecactivity
67770catalase1.11.1.6
67770superoxide dismutase1.15.1.1
122563oxidase-
122563beta-galactosidase3.2.1.23+
122563alcohol dehydrogenase1.1.1.1-
122563gelatinase-
122563amylase-
122563DNase-
122563caseinase3.4.21.50-
122563catalase1.11.1.6+
122563tween esterase-
122563gamma-glutamyltransferase2.3.2.2+
122563lecithinase-
122563lipase-
122563lysine decarboxylase4.1.1.18-
122563ornithine decarboxylase4.1.1.17-
122563tryptophan deaminase-
122563urease3.5.1.5+
68382alkaline phosphatase3.1.3.1+
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase3.4.11.1+
68382valine arylamidase-
68382cystine arylamidase3.4.11.3+
68382trypsin3.4.21.4-
68382alpha-chymotrypsin3.4.21.1-
68382acid phosphatase3.1.3.2+
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase3.2.1.22-
68382beta-galactosidase3.2.1.23+
68382beta-glucuronidase3.2.1.31-
68382alpha-glucosidase3.2.1.20-
68382beta-glucosidase3.2.1.21+
68382N-acetyl-beta-glucosaminidase3.2.1.52+
68382alpha-mannosidase3.2.1.24-
68382alpha-fucosidase3.2.1.51-

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122563-+++-+-+--++-+--++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122563----+/-+/----++++----+/----+--+/--+/-----+/-------------+/--+/--+/-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
10623soilKoreaRepublic of KoreaKORAsia
67770SoilKwanak Mountain, SeoulRepublic of KoreaKORAsia
67771From soilKwanak Mountain, SeoulRepublic of KoreaKORAsia
122563Environment, SoilKwanak mountain, SeoulRepublic of KoreaKORAsia1990

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1870.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_1474;99_1870&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: Z71365
  • Sequence Identity:
  • Total samples: 444
  • soil counts: 348
  • aquatic counts: 22
  • animal counts: 67
  • plant counts: 7

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
106231Risk group (German classification)
1225631Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
10623Streptomyces sp. 16S rRNA geneZ713651479ena1931
67771Streptomyces seoulensis gene for 16S rRNA, partial sequence, strain: NBRC 16668AB2499701481ena73044

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces seoulensis KCTC 9819GCA_004328625completencbi73044
66792Streptomyces seoulensis strain KCTC 981973044.9completepatric73044
66792Streptomyces seoulensis KCTC 98192857083903completeimg73044
67770Streptomyces seoulensis NRRL B-24310GCA_000725795scaffoldncbi73044

GC content

@refGC-contentmethod
6777071.9genome sequence analysis
6777068thermal denaturation, midpoint method (Tm)
6777168.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno94.333no
flagellatedno98.192no
gram-positiveyes90.528yes
anaerobicno99.005yes
aerobicyes92.403yes
halophileno93.35no
spore-formingyes93.933no
glucose-utilyes88.216no
thermophileno97.757yes
glucose-fermentno86.966no

External links

@ref: 10623

culture collection no.: DSM 41840, IMSNU 21266, KCTC 9819, JCM 10116, CIP 105312, IFO 16255, IFO 16668, NBRC 16255, NBRC 16668, NRRL B-24310, IMSNU 1, IFO (now NBRC) 16255, IFO (now NBRC) 16668

straininfo link

  • @ref: 85447
  • straininfo: 62892

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21622836Streptomyces gramineus sp. nov., an antibiotic-producing actinobacterium isolated from bamboo (Sasa borealis) rhizosphere soil.Lee HJ, Han SI, Whang KSInt J Syst Evol Microbiol10.1099/ijs.0.030163-02011Antibiosis, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny25687349Streptomyces albiflavescens sp. nov., an actinomycete isolated from soil.Han X, Zheng J, Xin D, Xin Y, Wei X, Zhang JInt J Syst Evol Microbiol10.1099/ijs.0.0001212015Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rainforest, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny31592758Streptomyces bauhiniae sp. nov., isolated from tree bark of Bauhinia variegata Linn. in Thailand.Kanchanasin P, Yuki M, Kudo T, Ohkuma M, Kuncharoen N, Phongsopitanun W, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0037432020Bacterial Typing Techniques, Base Composition, Bauhinia/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Bark/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/*classification/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10623Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41840)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41840
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39257Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17318
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85447Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID62892.1StrainInfo: A central database for resolving microbial strain identifiers
122563Curators of the CIPCollection of Institut Pasteur (CIP 105312)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105312