Strain identifier
BacDive ID: 163956
Type strain: 
Species: Telluribacter humicola
Strain history: T. Seo; Dept. of Life Sci., Dongguk Univ., South Korea; PTR3.
NCBI tax ID(s): 1720261 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 163956
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Telluribacter humicola JCM 31133 is an aerobe, mesophilic bacterium that was isolated from Soil from Goyang.
NCBI tax id
- NCBI tax id: 1720261
- Matching level: species
strain history
- @ref: 67770
- history: T. Seo; Dept. of Life Sci., Dongguk Univ., South Korea; PTR3.
doi: 10.13145/bacdive163956.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Spirosomataceae
- genus: Telluribacter
- species: Telluribacter humicola
- full scientific name: Telluribacter humicola Lee et al. 2017
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Spirosomaceae
genus: Telluribacter
species: Telluribacter humicola
full scientific name: Telluribacter humicola Lee et al. 2017
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 90.5 | |
| 125438 | 98.664 | negative | |
| 125439 | 98.6 | negative |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125438
- oxygen tolerance: aerobe
- confidence: 90.118
spore formation
- @ref: 125439
- spore formation: no
- confidence: 96.4
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil from Goyang
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_150487.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_496;96_17297;97_73893;98_99445;99_150487&stattab=map
- Last taxonomy: Telluribacter humicola subclade
- 16S sequence: KT630891
- Sequence Identity:
- Total samples: 817
- soil counts: 530
- aquatic counts: 116
- animal counts: 135
- plant counts: 36
Sequence information
16S sequences
- @ref: 67770
- description: Telluribacter humicola strain PTR3 16S ribosomal RNA gene, partial sequence
- accession: KT630891
- length: 1451
- database: nuccore
- NCBI tax ID: 1720261
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Telluribacter humicola KCTC 42819 | GCA_017355935 | scaffold | ncbi | 1720261 |
| 66792 | Telluribacter humicola strain KCTC 42819 | 1720261.3 | wgs | patric | 1720261 |
GC content
- @ref: 67770
- GC-content: 45.9
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.664 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.426 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 90.118 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 84.2 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.975 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 90.5 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 96.4 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 51.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 98.6 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 81.2 |
External links
@ref: 67770
culture collection no.: JCM 31133, KCTC 42819
literature
- topic: Phylogeny
- Pubmed-ID: 27522655
- title: Telluribacter humicola gen. nov., sp. nov., a new member of the family Cytophagaceae isolated from soil in South Korea.
- authors: Lee D, Jang JH, Cha S, Seo T
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-016-0754-x
- year: 2016
- mesh: Base Composition, Cytophagaceae/classification/genetics/*isolation & purification, Molecular Typing, Phylogeny, RNA, Bacterial, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology
- topic2: Enzymology
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |