General

@ref: 67770

BacDive-ID: 163918

DSM-Number: 100588

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Alkalicella caledoniensis JCM 30958 is a mesophilic bacterium that was isolated from Sediment slurry of 'La Crouen' thermal spring near Canala.

NCBI tax id

• NCBI tax id: 2731377
• Matching level: species

strain history

• @ref: 67770
• history: M. Quéméneur; Mediterr. Inst. of Oceanogr., France; LB2.

doi: 10.13145/bacdive163918.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacillota
• domain: Bacteria
• phylum: Bacillota
• class: Clostridia
• order: Eubacteriales
• family: Proteinivoracaceae
• genus: Alkalicella
• species: Alkalicella caledoniensis
• full scientific name: Alkalicella caledoniensis Quéméneur et al. 2021

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Proteinivoraceae

genus: Alkalicella

species: Alkalicella caledoniensis

full scientific name: Alkalicella caledoniensis Qu‚m‚neur et al. 2021

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 37
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Sediment slurry of 'La Crouen' thermal spring near Canala
• geographic location: New Caledonia
• country: French Overseas
• origin.country: FRA

taxonmaps

• @ref: 69479
• File name: preview.99_88722.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3665;96_36784;97_46743;98_61258;99_88722&stattab=map
• Last taxonomy: Anaerobranca
• 16S sequence: KR349724
• Sequence Identity:
• Total samples: 165
• soil counts: 54
• aquatic counts: 86
• animal counts: 22
• plant counts: 3

Sequence information

16S sequences

• @ref: 67770
• description: Alkalicella caledoniensis strain LB2 16S ribosomal RNA gene, partial sequence
• accession: KR349724
• length: 1374
• database: ena
• NCBI tax ID: 2731377

Genome sequences

• @ref: 67770
• description: Alkalicella caledoniensis LB2
• accession: GCA_014467015
• assembly level: complete
• database: ncbi
• NCBI tax ID: 2731377

GC content

• @ref: 67770
• GC-content: 36.2
• method: genome sequence analysis

External links

@ref: 67770

culture collection no.: JCM 30958, DSM 100588

straininfo link

• @ref: 114144
• straininfo: 406998

literature

• topic: Phylogeny
• Pubmed-ID: 34003738
• title: Alkalicella caledoniensis gen. nov., sp. nov., a novel alkaliphilic anaerobic bacterium isolated from 'La Crouen' alkaline thermal spring, New Caledonia.
• authors: Quemeneur M, Erauso G, Bartoli M, Vandecasteele C, Wils L, Gil L, Monnin C, Pelletier B, Postec A
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijsem.0.004810
• year: 2021
• mesh: Anaerobiosis, Bacteria, Anaerobic/classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Clostridiales/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, Hot Springs/*microbiology, New Caledonia, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
• topic2: Enzymology

Reference