Strain identifier
BacDive ID: 163884
Type strain: 
Species: Natronorubrum halophilum
Strain history: H.-L. Cui; Jiangsu Univ., China; SHR37.
NCBI tax ID(s): 1702106 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163884
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Natronorubrum halophilum JCM 30845 is a mesophilic archaeon that was isolated from Dabancheng Salt Lake.
NCBI tax id
- NCBI tax id: 1702106
- Matching level: species
strain history
- @ref: 67770
- history: H.-L. Cui; Jiangsu Univ., China; SHR37.
doi: 10.13145/bacdive163884.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Natrialbales
- family: Natrialbaceae
- genus: Natronorubrum
- species: Natronorubrum halophilum
- full scientific name: Natronorubrum halophilum Tao et al. 2020
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Natrialbales
family: Natrialbaceae
genus: Natronorubrum
species: Natronorubrum halophilum
full scientific name: Natronorubrum halophilum Tao et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Dabancheng Salt Lake
- geographic location: Xinjiang
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_193693.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17652;96_69643;97_92624;98_126233;99_193693&stattab=map
- Last taxonomy: Natronorubrum
- 16S sequence: KR012974
- Sequence Identity:
- Total samples: 1
- soil counts: 1
Sequence information
16S sequences
- @ref: 67770
- description: Halobacteriaceae archaeon SHR37 16S ribosomal RNA gene, partial sequence
- accession: KR012974
- length: 1475
- database: ena
- NCBI tax ID: 1702106
Genome sequences
- @ref: 67770
- description: Natronorubrum halophilum SHR37
- accession: GCA_003670115
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1702106
GC content
- @ref: 67770
- GC-content: 62.9
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 78.933 | no |
| flagellated | no | 96.078 | no |
| gram-positive | no | 95.435 | no |
| anaerobic | no | 98.086 | no |
| aerobic | yes | 92.992 | no |
| halophile | yes | 88.848 | no |
| spore-forming | no | 92.976 | no |
| glucose-util | yes | 91.707 | no |
| thermophile | no | 90.48 | no |
| glucose-ferment | no | 83.377 | no |
External links
@ref: 67770
culture collection no.: JCM 30845, CGMCC 1.15233
literature
- topic: Phylogeny
- Pubmed-ID: 31993986
- title: Natronorubrum halophilum sp. nov. isolated from two inland salt lakes.
- authors: Tao CQ, Ding Y, Zhao YJ, Cui HL
- journal: J Microbiol
- DOI: 10.1007/s12275-020-9514-8
- year: 2020
- mesh: China, Classification, DNA, Archaeal, Genome, Archaeal, Glycolipids/chemistry, Halobacteriaceae/*classification/*genetics/*isolation & purification/metabolism, Lakes, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Tibet
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |