Strain identifier
BacDive ID: 163816
Type strain: 
Species: Methyloversatilis discipulorum
Strain history: M. Kalyuzhnaya; Univ. of Washington, USA; FAM1.
NCBI tax ID(s): 1119528 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163816
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Methyloversatilis discipulorum JCM 30542 is a mesophilic bacterium that was isolated from Sediment of the freshwater Lake Washington.
NCBI tax id
- NCBI tax id: 1119528
- Matching level: species
strain history
- @ref: 67770
- history: M. Kalyuzhnaya; Univ. of Washington, USA; FAM1.
doi: 10.13145/bacdive163816.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Nitrosomonadales
- family: Sterolibacteriaceae
- genus: Methyloversatilis
- species: Methyloversatilis discipulorum
- full scientific name: Methyloversatilis discipulorum Smalley et al. 2015
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Nitrosomonadales
family: Sterolibacteriaceae
genus: Methyloversatilis
species: Methyloversatilis discipulorum
full scientific name: Methyloversatilis discipulorum Smalley et al. 2015
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 27
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sediment of the freshwater Lake Washington
taxonmaps
- @ref: 69479
- File name: preview.99_1895.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_771;97_899;98_1055;99_1895&stattab=map
- Last taxonomy: Methyloversatilis
- 16S sequence: NR_136517
- Sequence Identity:
- Total samples: 38738
- soil counts: 4532
- aquatic counts: 19367
- animal counts: 11480
- plant counts: 3359
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Methyloversatilis discipulorum strain FAM1 16S ribosomal RNA, complete sequence | NR_136516 | 1533 | nuccore | 1119528 |
| 67770 | Methyloversatilis discipulorum strain FAM1 16S ribosomal RNA, complete sequence | NR_136517 | 1533 | nuccore | 1119528 |
Genome sequences
- @ref: 67770
- description: Methyloversatilis discipulorum FAM1
- accession: GCA_000527135
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1119528
GC content
- @ref: 67770
- GC-content: 66.6
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 88.409 | no |
| flagellated | yes | 85.079 | no |
| gram-positive | no | 99.169 | no |
| anaerobic | no | 97.798 | no |
| halophile | no | 89.244 | no |
| spore-forming | no | 95.565 | no |
| thermophile | no | 97.579 | yes |
| glucose-util | no | 69.39 | no |
| aerobic | yes | 85.69 | no |
| glucose-ferment | no | 87.518 | no |
External links
@ref: 67770
culture collection no.: JCM 30542, VKM B-2888
literature
- topic: Phylogeny
- Pubmed-ID: 26231539
- title: Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.
- authors: Smalley NE, Taipale S, De Marco P, Doronina NV, Kyrpides N, Shapiro N, Woyke T, Kalyuzhnaya MG
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000190
- year: 2015
- mesh: Alcohol Oxidoreductases/chemistry, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genome, Bacterial, Genomics, Geologic Sediments/*microbiology, Lakes/microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodocyclaceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Washington
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |