Strain identifier

BacDive ID: 1638

Type strain: Yes

Species: Bartonella capreoli

Strain history: CIP <- 2000, Y. Piemont, Louis Pasteur Univ., Strasbourg, France: strain IBS 193 <- R. Heller

NCBI tax ID(s): 155192 (species)

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General

@ref: 15668

BacDive-ID: 1638

DSM-Number: 21569

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped, animal pathogen

description: Bartonella capreoli DSM 21569 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from blood of roe-deer Capreolus capreolus.

NCBI tax id

  • NCBI tax id: 155192
  • Matching level: species

strain history

@refhistory
15668<- CIP <- Y. Piémont, ULP, Strasbourg; IBS 193 <- R. Heller
117173CIP <- 2000, Y. Piemont, Louis Pasteur Univ., Strasbourg, France: strain IBS 193 <- R. Heller

doi: 10.13145/bacdive1638.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Bartonellaceae
  • genus: Bartonella
  • species: Bartonella capreoli
  • full scientific name: Bartonella capreoli Bermond et al. 2002

@ref: 15668

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Bartonellaceae

genus: Bartonella

species: Bartonella capreoli

full scientific name: Bartonella capreoli Bermond et al. 2002

type strain: yes

Morphology

cell morphology

@refgram staincell shapeconfidencemotility
23360negativerod-shaped
69480negative99.986
117173negativerod-shapedyes

colony morphology

@refincubation periodcolony colormedium used
156683-7 days
2336010 daysgrey-whiteblood agar
117173

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15668Columbia blood agar 10% (DSMZ Medium 429e)yeshttps://mediadive.dsmz.de/medium/429eName: e. COLUMBIA BLOOD AGAR 10% (DSMZ Medium 429e) Composition: Horse blood 100.0 g/l Columbia agar base
23360blood agaryes
38638MEDIUM 70 - columbia agar with horse blood and hemin for BartonellayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);Hemin solution - M00149 (10.000 ml)
117173CIP Medium 70yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=70

culture temp

@refgrowthtypetemperaturerange
15668positivegrowth37mesophilic
23360positivegrowth35mesophilic
38638positivegrowth37mesophilic
117173positivegrowth30-37mesophilic
117173nogrowth10psychrophilic
117173nogrowth15psychrophilic
117173nogrowth25mesophilic
117173nogrowth41thermophilic
117173nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 15668
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.979

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
23360506227N-acetylglucosamine-hydrolysis
2336027082trehalose-hydrolysis
233603122bis-4-nitrophenyl phosphate+hydrolysis
2336029016arginine+other
2336015428glycine+other
2336025017leucine+other
2336025094lysine+other
2336016811methionine+other
2336026271proline+other
2336027897tryptophan+other
1171734853esculin-hydrolysis
117173606565hippurate-hydrolysis
11717317632nitrate-reduction
11717316301nitrite-reduction
6837717634D-glucose+builds acid from
6837715824D-fructose-builds acid from
6837717992sucrose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

antibiotic resistance

  • @ref: 117173
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
2336015688acetoinno
6837735581indoleno
11717335581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
2336015688acetoin-
6837735581indole-

enzymes

@refvalueactivityec
15668catalase+1.11.1.6
15668cytochrome-c oxidase-1.9.3.1
23360catalase-1.11.1.6
23360cytochrome oxidase-1.9.3.1
23360urease-3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
117173oxidase-
117173beta-galactosidase+3.2.1.23
117173alcohol dehydrogenase-1.1.1.1
117173gelatinase-
117173catalase-1.11.1.6
117173gamma-glutamyltransferase+2.3.2.2
117173lysine decarboxylase-4.1.1.18
117173ornithine decarboxylase-4.1.1.17
117173phenylalanine ammonia-lyase-4.3.1.24
117173tryptophan deaminase-
117173urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
117173--++-+---------+----

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
15668-+-+/-+-----+/---

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation date
15668blood of roe-deer Capreolus capreolusCapreolus capreolusforest of ChizéFranceFRAEurope46.1167-0.35
117173Capreolus capreolusBeauvais sur NiortFranceFRAEurope1996

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_3284.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_2519;99_3284&stattab=map
  • Last taxonomy: Bartonella
  • 16S sequence: AF293389
  • Sequence Identity:
  • Total samples: 180
  • soil counts: 21
  • aquatic counts: 30
  • animal counts: 125
  • plant counts: 4

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
15668yes2Risk group (German classification)
1171732Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Bartonella capreoli strain CIP 106691 16S-23S ribosomal RNA intergenic spacer, partial sequenceGQ464369194ena155192
15668Bartonella capreoli 16S ribosomal RNA gene, partial sequenceAF2933891443ena155192

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bartonella capreoli DSM 21569GCA_902813205scaffoldncbi155192
66792Bartonella capreoli strain DSM 21569155192.3wgspatric155192

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno92.345no
gram-positiveno98.811no
anaerobicno96.511yes
aerobicno96.798yes
halophileno63.523no
spore-formingno97.17no
thermophileno80.406yes
glucose-utilno50no
motileyes54.797no
glucose-fermentno71.44no

External links

@ref: 15668

culture collection no.: DSM 21569, CCUG 43827, CIP 106691, IBS 193

straininfo link

  • @ref: 71285
  • straininfo: 100531

literature

  • topic: Phylogeny
  • Pubmed-ID: 11931146
  • title: Bartonella bovis Bermond et al. sp. nov. and Bartonella capreoli sp. nov., isolated from European ruminants.
  • authors: Bermond D, Boulouis HJ, Heller R, Van Laere G, Monteil H, Chomel BB, Sander A, Dehio C, Piemont Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-2-383
  • year: 2002
  • mesh: Animals, Bacteremia, Bartonella/*classification/isolation & purification/physiology, Cattle/*microbiology, Citrate (si)-Synthase/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Deer/*microbiology, Europe, Female, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/chemistry
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15668Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21569)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21569
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23360Delphine Bermond, Henri-Jean Boulouis, Rémy Heller, Guy Van Laere, Henri Monteil, Bruno B Chomel, Anna Sander, Christoph Dehio, Yves Piémont10.1099/00207713-52-2-383Bartonella bovis Bermond et al. sp. nov. and Bartonella capreoli sp. nov., isolated from European ruminantsIJSEM 52: 383-390 200211931146
38638Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18849
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68377Automatically annotated from API NH
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71285Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100531.1StrainInfo: A central database for resolving microbial strain identifiers
117173Curators of the CIPCollection of Institut Pasteur (CIP 106691)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106691