Strain identifier
BacDive ID: 163797
Type strain: 
Species: Halobacillus marinus
Strain history: V. Raina, KIIT Univ., India; KGW1.
NCBI tax ID(s): 2699466 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 163797
DSM-Number: 29522
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Halobacillus marinus JCM 30443 is a spore-forming, mesophilic bacterium that was isolated from Brackish water from Kaluadaghat, Chilika Lake.
NCBI tax id
- NCBI tax id: 2699466
- Matching level: species
strain history
- @ref: 67770
- history: V. Raina, KIIT Univ., India; KGW1.
doi: 10.13145/bacdive163797.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Halobacillus
- species: Halobacillus marinus
- full scientific name: Halobacillus marinus Panda et al. 2018
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Bacillaceae
genus: Halobacillus
species: Halobacillus marinus
full scientific name: Halobacillus marinus Panda et al.
type strain: yes
Morphology
cell morphology
- @ref: 125439
- motility: yes
- confidence: 92
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | yes | 94.029 |
| 125439 | yes | 97.1 |
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Brackish water from Kaluadaghat, Chilika Lake
- geographic location: Odisha
- country: India
- origin.country: IND
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_774.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_469;97_536;98_617;99_774&stattab=map
- Last taxonomy: Halobacillus
- 16S sequence: KJ563233
- Sequence Identity:
- Total samples: 5980
- soil counts: 2306
- aquatic counts: 2677
- animal counts: 590
- plant counts: 407
Sequence information
16S sequences
- @ref: 67770
- description: Halobacillus marinus strain KGW1 16S ribosomal RNA gene, partial sequence
- accession: KJ563233
- length: 1416
- database: nuccore
- NCBI tax ID: 2699466
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halobacillus sp. KGW1 | 1793726.3 | wgs | patric | 1793726 |
| 67770 | Halobacillus sp. KGW1 | GCA_001592845 | scaffold | ncbi | 1793726 |
GC content
- @ref: 67770
- GC-content: 46.98
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 80.471 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.91 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 94.029 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 82.081 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.425 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 84.53 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 97.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 92 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 89 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 80.7 |
External links
@ref: 67770
culture collection no.: JCM 30443, DSM 29522
literature
- topic: Phylogeny
- Pubmed-ID: 29611137
- title: Taxonomic description and genome sequence of Halobacillus marinus sp. nov., a novel strain isolated from Chilika Lake, India.
- authors: Panda AN, Mishra SR, Ray L, Das S, Rastogi G, Pattanaik AK, Adhya TK, Suar M, Raina V
- journal: J Microbiol
- DOI: 10.1007/s12275-018-7387-x
- year: 2018
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, *Genome, Bacterial, Genotype, Halobacillus/chemistry/*classification/*genetics/isolation & purification, India, Lakes/*microbiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |