General

@ref: 67770

BacDive-ID: 163792

keywords: 16S sequence, Bacteria

description: Burkholderia sp. JCM 30421 is a bacterium that was isolated from Mud from Lake Kasumigaura.

NCBI tax id

• NCBI tax id: 36773
• Matching level: species

strain history

• @ref: 67770
• history: A. Nakamura; Univ. of Tsukuba, Japan; a13 <-- E. R. Graminho.

doi: 10.13145/bacdive163792.20240510.9

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Betaproteobacteria
• order: Burkholderiales
• family: Burkholderiaceae
• genus: Burkholderia
• species: Burkholderia sp.
• full scientific name: Burkholderia Yabuuchi et al. 1993

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Burkholderia

species: Burkholderia sp.

full scientific name: Burkholderia sp.

type strain: no

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 30

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Mud from Lake Kasumigaura
• geographic location: Ibaraki Pref.
• country: Japan
• origin.country: JPN
• continent: Asia

taxonmaps

• @ref: 69479
• File name: preview.99_28142.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_18;97_2288;98_21044;99_28142&stattab=map
• Last taxonomy: Burkholderia
• 16S sequence: LC002813
• Sequence Identity:
• Total samples: 3211
• soil counts: 1866
• aquatic counts: 235
• animal counts: 395
• plant counts: 715

Sequence information

16S sequences

• @ref: 67770
• description: Burkholderia sp. a13(2014) gene for 16S ribosomal RNA, partial sequence
• accession: LC002813
• length: 1429
• database: nuccore
• NCBI tax ID: 1546488

External links

@ref: 67770

culture collection no.: JCM 30421

literature

• topic: Enzymology
• Pubmed-ID: 25833676
• title: Purification, biochemical characterization, and genetic cloning of the phytase produced by Burkholderia sp. strain a13.
• authors: Graminho ER, Takaya N, Nakamura A, Hoshino T
• journal: J Gen Appl Microbiol
• DOI: 10.2323/jgam.61.15
• year: 2015
• mesh: 6-Phytase/chemistry/*genetics/isolation & purification/*metabolism, Amino Acid Sequence, Burkholderia/*enzymology/isolation & purification, Cloning, Molecular, Escherichia coli/genetics, Hafnia alvei/enzymology, Lakes/*microbiology, Molecular Sequence Data, Phosphorus/metabolism, Phytic Acid/metabolism, Recombinant Proteins/biosynthesis, Sequence Analysis, DNA, Substrate Specificity, Sulfhydryl Compounds/metabolism
• topic2: Metabolism

Reference