Strain identifier

BacDive ID: 163772

Type strain: Yes

Species: Pedobacter lotistagni

Strain history: T.-H. Yi; Kyung Hee Univ., South Korea; THG-DN6.8.

NCBI tax ID(s): 1537390 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 163772

keywords: 16S sequence, Bacteria

description: Pedobacter lotistagni JCM 30354 is a bacterium that was isolated from Lotus pond in Daejeon.

NCBI tax id

  • NCBI tax id: 1537390
  • Matching level: species

strain history

  • @ref: 67770
  • history: T.-H. Yi; Kyung Hee Univ., South Korea; THG-DN6.8.

doi: 10.13145/bacdive163772.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Sphingobacteriia
  • order: Sphingobacteriales
  • family: Sphingobacteriaceae
  • genus: Pedobacter
  • species: Pedobacter lotistagni
  • full scientific name: Pedobacter lotistagni Singh et al. 2015

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Pedobacter

species: Pedobacter lotistagni

full scientific name: Pedobacter lotistagni Singh et al. 2015

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Lotus pond in Daejeon
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

Sequence information

16S sequences

  • @ref: 67770
  • description: Pedobacter lotistagni 16S ribosomal RNA gene, partial sequence
  • accession: KM035962
  • length: 1433
  • database: nuccore
  • NCBI tax ID: 1537390

GC content

  • @ref: 67770
  • GC-content: 36.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 30354, KCTC 42229

literature

  • topic: Phylogeny
  • Pubmed-ID: 25613852
  • title: Pedobacter lotistagni sp. nov. isolated from lotus pond water.
  • authors: Singh H, Du J, Ngo HT, Kim KY, Yi TH
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-015-0387-5
  • year: 2015
  • mesh: Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Culture Media/chemistry, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Korea, Locomotion, Lotus/growth & development, Molecular Sequence Data, Nucleic Acid Hybridization, Pedobacter/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, Phylogeny, Ponds/*microbiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature
  • topic2: Genetics

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/