General

@ref: 67770

BacDive-ID: 163769

keywords: 16S sequence, Bacteria, mesophilic

description: Pedobacter edaphicus JCM 30351 is a mesophilic bacterium that was isolated from Forest soil.

NCBI tax id

• NCBI tax id: 1537387
• Matching level: species

strain history

• @ref: 67770
• history: T.-H. Yi; Kyung Hee Univ., South Korea; THG-DA2.1.

doi: 10.13145/bacdive163769.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/bacteroidota
• domain: Bacteria
• phylum: Bacteroidota
• class: Sphingobacteriia
• order: Sphingobacteriales
• family: Sphingobacteriaceae
• genus: Pedobacter
• species: Pedobacter edaphicus
• full scientific name: Pedobacter edaphicus Singh et al. 2015

@ref: 67770

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Pedobacter

species: Pedobacter edaphicus

full scientific name: Pedobacter edaphicus Singh et al. 2015

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Forest soil

Sequence information

16S sequences

• @ref: 67770
• description: Pedobacter edaphicus strain THG-DA2.1 16S ribosomal RNA gene, partial sequence
• accession: KM035953
• length: 1438
• database: ena
• NCBI tax ID: 1537387

GC content

• @ref: 67770
• GC-content: 42.3
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 30351, KCTC 42232

literature

• topic: Phylogeny
• Pubmed-ID: 25925590
• title: Pedobacter edaphicus sp. nov. isolated from forest soil in South Korea.
• authors: Singh H, Du J, Ngo HT, Won KH, Kim KY, Yi TH
• journal: Arch Microbiol
• DOI: 10.1007/s00203-015-1114-3
• year: 2015
• mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/isolation & purification, Fatty Acids/analysis, *Forests, Nucleic Acid Hybridization, Pedobacter/genetics/*isolation & purification, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/isolation & purification, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology
• topic2: Enzymology

Reference