General

@ref: 67770

BacDive-ID: 163756

keywords: 16S sequence, Bacteria, mesophilic

description: Nocardioides echinoideorum JCM 30276 is a mesophilic bacterium that was isolated from Sea urchins.

NCBI tax id

• NCBI tax id: 1549646
• Matching level: species

strain history

• @ref: 67770
• history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-CZW004.

doi: 10.13145/bacdive163756.20230509.8

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/actinomycetota
• domain: Bacteria
• phylum: Actinomycetota
• class: Actinomycetes
• order: Propionibacteriales
• family: Nocardioidaceae
• genus: Nocardioides
• species: Nocardioides echinoideorum
• full scientific name: Nocardioides echinoideorum Lin et al. 2015

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Propionibacteriales

family: Nocardioidaceae

genus: Nocardioides

species: Nocardioides echinoideorum

full scientific name: Nocardioides echinoideorum Lin et al. 2015

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: MK-8

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Sea urchins
• geographic location: Penghu Island
• country: Taiwan
• origin.country: TWN
• continent: Asia

Sequence information

16S sequences

• @ref: 67770
• description: Nocardioides echinoideorum strain CC-CZW004 16S ribosomal RNA gene, partial sequence
• accession: KM085325
• length: 1499
• database: ena
• NCBI tax ID: 1549646

GC content

• @ref: 67770
• GC-content: 73.3
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 30276, BCRC 16974

literature

• topic: Phylogeny
• Pubmed-ID: 25805631
• title: Nocardioides echinoideorum sp. nov., isolated from sea urchins (Tripneustes gratilla).
• authors: Lin SY, Wen CZ, Hameed A, Liu YC, Hsu YH, Shen FT, Lai WA, Young CC
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.000206
• year: 2015
• mesh: Actinomycetales/*classification/genetics/isolation & purification, Animals, Bacteria, Aerobic/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sea Urchins/*microbiology, Seafood/*microbiology, Sequence Analysis, DNA, Taiwan, Vitamin K 2/analogs & derivatives/chemistry
• topic2: Enzymology

Reference