Strain identifier
BacDive ID: 163719
Type strain: 
Species: Flavobacterium seoulense
Strain history: H. Yi; Korea Univ., South Korea; EM1321.
NCBI tax ID(s): 1492738 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163719
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Flavobacterium seoulense JCM 30145 is a mesophilic bacterium that was isolated from Stream water in Bukhansan National Park.
NCBI tax id
- NCBI tax id: 1492738
- Matching level: species
strain history
- @ref: 67770
- history: H. Yi; Korea Univ., South Korea; EM1321.
doi: 10.13145/bacdive163719.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium seoulense
- full scientific name: Flavobacterium seoulense Shin et al. 2015
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium seoulense
full scientific name: Flavobacterium seoulense Shin et al. 2015
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Stream water in Bukhansan National Park
- geographic location: Seoul
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_5923.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_2832;97_3480;98_4401;99_5923&stattab=map
- Last taxonomy: Flavobacterium seoulense subclade
- 16S sequence: KJ461685
- Sequence Identity:
- Total samples: 1067
- soil counts: 289
- aquatic counts: 422
- animal counts: 103
- plant counts: 253
Sequence information
16S sequences
- @ref: 67770
- description: Flavobacterium seoulense strain EM1321 16S ribosomal RNA gene, partial sequence
- accession: KJ461685
- length: 1362
- database: ena
- NCBI tax ID: 1492738
Genome sequences
- @ref: 67770
- description: Flavobacterium seoulense EM1321
- accession: GCA_000695795
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1492738
GC content
- @ref: 67770
- GC-content: 33.25
- method: genome sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 89.821 | no |
| flagellated | no | 94.3 | no |
| gram-positive | no | 98.081 | no |
| anaerobic | no | 99.757 | no |
| halophile | no | 95.688 | no |
| spore-forming | no | 93.946 | no |
| glucose-util | yes | 85.855 | no |
| aerobic | yes | 92.424 | no |
| thermophile | no | 99.449 | yes |
| glucose-ferment | no | 89.675 | no |
External links
@ref: 67770
culture collection no.: JCM 30145, KACC 18114
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |