Strain identifier
BacDive ID: 163700
Type strain: 
Species: Halovenus salina
Strain history: C. Infante ASP54.
NCBI tax ID(s): 1510225 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 163700
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Halovenus salina JCM 30072 is a mesophilic archaeon that was isolated from Pond water of a saltern in Isla Bacuta.
NCBI tax id
- NCBI tax id: 1510225
- Matching level: species
strain history
- @ref: 67770
- history: C. Infante ASP54.
doi: 10.13145/bacdive163700.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halovenus
- species: Halovenus salina
- full scientific name: Halovenus salina Infante-Domínguez et al. 2015
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halovenus
species: Halovenus salina
full scientific name: Halovenus salina Infante-Dom¡nguez et al. 2015
type strain: yes
Morphology
cell morphology
- @ref: 125438
- motility: no
- confidence: 91
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
spore formation
- @ref: 125439
- spore formation: no
- confidence: 90.3
observation
- @ref: 67770
- observation: quinones: MK-8, MK-8(H2)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Pond water of a saltern in Isla Bacuta
- geographic location: Hvelva
- country: Spain
- origin.country: ESP
- continent: Europe
taxonmaps
- @ref: 69479
- File name: preview.99_194704.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17685;96_69720;97_93229;98_126848;99_194704&stattab=map
- Last taxonomy: Halovenus salina subclade
- 16S sequence: KJ661744
- Sequence Identity:
- Total samples: 1
- animal counts: 1
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Halovenus salina strain ASP54 16S ribosomal RNA gene, partial sequence | KJ661744 | 1402 | nuccore | 1510225 |
| 124043 | Halovenus salina strain JCM 30072 16S ribosomal RNA gene, partial sequence. | OP218104 | 1377 | nuccore | 1510225 |
Genome sequences
- @ref: 66792
- description: Halovenus salina JCM 30072
- accession: GCA_026410925
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1510225
GC content
- @ref: 67770
- GC-content: 63.1
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 76.9 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 79.3 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 71.487 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 83.572 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 80.385 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 91 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 90.3 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 66.9 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 62.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate anaerobe | 63.6 |
External links
@ref: 67770
culture collection no.: JCM 30072, CECT 8749, IBRC M 10946
literature
- topic: Phylogeny
- Pubmed-ID: 26040580
- title: Halovenus salina sp. nov., an extremely halophilic archaeon isolated from a saltern.
- authors: Infante-Dominguez C, Corral P, Sanchez-Porro C, Ventosa A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000370
- year: 2015
- mesh: Animals, Arthropods, Base Composition, DNA, Archaeal/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Halobacteriaceae/classification/isolation & purification, Molecular Sequence Data, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Spain
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |