Strain identifier

BacDive ID: 16370

Type strain: Yes

Species: Streptomyces monomycini

Strain history: INA 1465 <-- L. P. Terekhova.

NCBI tax ID(s): 371720 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 10585

BacDive-ID: 16370

DSM-Number: 41801

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces monomycini DSM 41801 is a spore-forming, mesophilic bacterium of the family Streptomycetaceae.

NCBI tax id

  • NCBI tax id: 371720
  • Matching level: species

strain history

@refhistory
10585<- L. Evtushenko, VKM
67770INA 1465 <-- L. P. Terekhova.

doi: 10.13145/bacdive16370.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces monomycini
  • full scientific name: Streptomyces monomycini Gauze and Terekhova 1986

@ref: 10585

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces monomycini

full scientific name: Streptomyces monomycini Gauze and Terekhova 1986 emend. Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.449
69480100positive

multimedia

@refmultimedia contentintellectual property rightscaption
10585https://www.dsmz.de/microorganisms/photos/DSM_41801-1.jpg© Leibniz-Institut DSMZ
10585https://www.dsmz.de/microorganisms/photos/DSM_41801.jpg© Leibniz-Institut DSMZMedium 65 28°C

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10585GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10585ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10585STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10585positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_134.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_119;99_134&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB249936
  • Sequence Identity:
  • Total samples: 438
  • soil counts: 379
  • aquatic counts: 28
  • animal counts: 28
  • plant counts: 3

Safety information

risk assessment

  • @ref: 10585
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces monomycini gene for 16S rRNA, partial sequence, strain: NBRC 100769AB2499361484ena371720
20218Streptomyces monomycini strain NRRL B-24309 16S ribosomal RNA gene, partial sequenceDQ4457901573ena371720

Genome sequences

  • @ref: 67770
  • description: Streptomyces monomycini NRRL B-24309
  • accession: GCA_000715845
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 371720

GC content

  • @ref: 67770
  • GC-content: 72.1
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno92.099no
flagellatedno97.638no
gram-positiveyes90.414no
anaerobicno99.087no
halophileno94.328no
spore-formingyes95.451no
glucose-utilyes90.456no
aerobicyes92.115no
thermophileno98.176yes
glucose-fermentno89.794no

External links

@ref: 10585

culture collection no.: DSM 41801, INA 1465, JCM 9768, VKM Ac-2283, NBRC 100769, NRRL B-24309

straininfo link

  • @ref: 85424
  • straininfo: 65979

literature

  • topic: Enzymology
  • Pubmed-ID: 1329689
  • title: [Comparative study of Streptomyces--producer of aminoglycoside antibiotics, monomycin and kanamycin, and the strain 344 obtained by fusion of their protoplasts by the method of restrictive total DNA fingerprinting].
  • authors: Malanicheva IA, Koz'mian LI, Dudnik IuV, Florova GIa, Orekhov AV
  • journal: Antibiot Khimioter
  • year: 1992
  • mesh: Cell Fusion/genetics, DNA Fingerprinting/*methods, DNA Restriction Enzymes/genetics, Erythromycin Ethylsuccinate/metabolism, Genetic Markers/genetics, Kanamycin/biosynthesis, Protoplasts/*cytology, *Restriction Mapping, Streptomyces/cytology/*genetics/isolation & purification/metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10585Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41801)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41801
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85424Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID65979.1StrainInfo: A central database for resolving microbial strain identifiers