Strain identifier
BacDive ID: 163694
Type strain: 
Species: Halomarina salina
Strain history: H.-L. Cui; Jiangsu Univ., China; ZS-57-S.
NCBI tax ID(s): 1872699 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 163694
keywords: 16S sequence, Archaea, mesophilic
description: Halomarina salina JCM 30039 is a mesophilic archaeon that was isolated from Zhoushan marine solar saltern.
NCBI tax id
- NCBI tax id: 1872699
- Matching level: species
strain history
- @ref: 67770
- history: H.-L. Cui; Jiangsu Univ., China; ZS-57-S.
doi: 10.13145/bacdive163694.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halomarina
- species: Halomarina salina
- full scientific name: Halomarina salina Xu et al. 2016
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halomarina
species: Halomarina salina
full scientific name: Halomarina salina Xu et al. 2016
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Zhoushan marine solar saltern
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_189165.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17662;96_69805;97_90648;98_123201;99_189165&stattab=map
- Last taxonomy: Halomarina oriensis subclade
- 16S sequence: KC918832
- Sequence Identity:
- Total samples: 214
- soil counts: 81
- aquatic counts: 120
- animal counts: 10
- plant counts: 3
Sequence information
16S sequences
- @ref: 67770
- description: Halobacteriaceae archaeon ZS-57-S 16S ribosomal RNA gene, partial sequence
- accession: KC918832
- length: 1472
- database: nuccore
- NCBI tax ID: 1364948
GC content
- @ref: 67770
- GC-content: 67.1
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 67770
culture collection no.: JCM 30039, CGMCC 1.12543
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 27198657 | Halomarina salina sp. nov., isolated from a marine solar saltern. | Xu WM, Xu JQ, Zhou Y, Li Y, Lu ZZ, Hou J, Zhu L, Cui HL | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0714-5 | 2016 | China, Genome, Archaeal, Halobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Phospholipids/metabolism, Phylogeny, Pigments, Biological/metabolism, Salinity, Seawater/*microbiology, Sequence Analysis, DNA | Metabolism |
| Phylogeny | 28779470 | Halomarina rubra sp. nov., isolated from a marine solar saltern. | Zhou Y, Li Y, Lu ZZ, Cui HL | Arch Microbiol | 10.1007/s00203-017-1420-z | 2017 | Base Composition/genetics, China, DNA, Archaeal/genetics, Glycolipids/analysis, *Halobacteriaceae/classification/genetics/isolation & purification, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/pharmacology | Enzymology |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |