Archive BacDiveID:10.13145/bacdive16369.20230509.8.1

Strain identifier

BacDive ID: 16369

Type strain:

Species: Streptomyces albidochromogenes

Strain history: DSM 41800 <-- L. I. Evtushenko VKM Ac-2282.

NCBI tax ID(s): 329524 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 10584

BacDive-ID: 16369

DSM-Number: 41800

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Streptomyces albidochromogenes DSM 41800 is a spore-forming, mesophilic bacterium of the family Streptomycetaceae.

NCBI tax id

NCBI tax id: 329524
Matching level: species

strain history

@ref	history
10584	<- L. Evtushenko, VKM
67770	DSM 41800 <-- L. I. Evtushenko VKM Ac-2282.

doi: 10.13145/bacdive16369.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Kitasatosporales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces albidochromogenes
full scientific name: Streptomyces albidochromogenes Preobrazhenskaya 1986

@ref: 10584

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albidochromogenes

full scientific name: Streptomyces albidochromogenes Preobrazhenskaya 1986

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	no	92.7
69480		100	positive

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
10584	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	yes	https://mediadive.dsmz.de/medium/65	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10584	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	yes	https://mediadive.dsmz.de/medium/84	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10584	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	yes	https://mediadive.dsmz.de/medium/252	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
10584	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

spore formation

@ref	spore formation	confidence
69481	yes	97
69480	yes	100

Isolation, sampling and environmental information

taxonmaps

@ref: 69479
File name: preview.99_834.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_662;99_834&stattab=map
Last taxonomy: Streptomyces
16S sequence: AY999884
Sequence Identity:
Total samples: 1611
soil counts: 953
aquatic counts: 126
animal counts: 103
plant counts: 429

Safety information

risk assessment

@ref: 10584
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Streptomyces albidochromogenes strain AS 4.1863 16S ribosomal RNA gene, partial sequence	AY999884	1412	ena	329524
20218	Streptomyces albidochromogenes gene for 16S rRNA, partial sequence, strain: NBRC 101003	AB249953	1468	ena	329524

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Streptomyces albidochromogenes strain DSM 41800	329524.4	wgs	patric	329524
67770	Streptomyces albidochromogenes DSM 41800	GCA_005981925	contig	ncbi	329524

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	yes	97	no
gram-positive	yes	88.759	no
anaerobic	no	98.853	no
halophile	no	94.031	no
spore-forming	yes	94.938	no
glucose-util	yes	90.257	no
motile	no	94.142	no
flagellated	no	97.877	no
aerobic	yes	91.061	no
thermophile	no	96.715	yes
glucose-ferment	no	90.841	no

External links

@ref: 10584

culture collection no.: DSM 41800, AS 4.1863, INA 11792, JCM 13858, NBRC 101003, VKM Ac-2282, CGMCC 4.1863

straininfo link

@ref: 85423
straininfo: 93399

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	19567563	Streptomyces hypolithicus sp. nov., isolated from an Antarctic hypolith community.	Le Roes-Hill M, Rohland J, Meyers PR, Cowan DA, Burton SG	Int J Syst Evol Microbiol	10.1099/ijs.0.007971-0	2009	Antarctic Regions, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/classification/genetics/*isolation & purification/physiology	Genetics
Phylogeny	31204968	Streptomyces altiplanensis sp. nov., an alkalitolerant species isolated from Chilean Altiplano soil, and emended description of Streptomyces chryseus (Krasil'nikov et al. 1965) Pridham 1970.	Cortes-Albayay C, Dorador C, Schumann P, Schniete JK, Herron P, Andrews B, Asenjo J, Nouioui I	Int J Syst Evol Microbiol	10.1099/ijsem.0.003525	2019	Alkalies, Altitude, Bacterial Typing Techniques, Base Composition, Chile, DNA, Bacterial/genetics, Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Hydrogen-Ion Concentration, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/classification/isolation & purification	Transcriptome

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
10584	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41800)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-41800
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch		10.21203/rs.3.rs-2527258/v1	Predictions based on the model GenomeNet Sporulation v. 1
85423	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID93399.1	StrainInfo: A central database for resolving microbial strain identifiers