Strain identifier
BacDive ID: 163688
Type strain: 
Species: Vibrio injensis
Strain history: Y.-H. Chang M12-1144.
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 163688
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Vibrio injensis JCM 30011 is a mesophilic, Gram-negative bacterium that was isolated from Blood from a patient at Inje University Busan Paik Hospital.
strain history
- @ref: 67770
- history: Y.-H. Chang M12-1144.
doi: 10.13145/bacdive163688.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio injensis
- full scientific name: Vibrio injensis corrig. Paek et al. 2021
synonyms
- @ref: 20215
- synonym: Vibrio injenensis
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio injenensis
full scientific name: Vibrio injenensis Paek et al.
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 94.1 |
| 125438 | negative | 100 |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 93.2 |
| 125438 | no | 91.647 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Blood from a patient at Inje University Busan Paik Hospital
- geographic location: Busan
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Vibrio injensis 16S ribosomal RNA gene, partial sequence
- accession: KC634073
- length: 1428
- database: nuccore
- NCBI tax ID: 1307414
Genome sequences
- @ref: 67770
- description: Vibrio injensis M12-1144
- accession: GCA_001895205
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1307414
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.206 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 63.324 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.647 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 88.327 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 93.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 55.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 94.1 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 68.5 |
External links
@ref: 67770
culture collection no.: JCM 30011, KCTC 32233
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |