Strain identifier

BacDive ID: 16366

Type strain: Yes

Species: Streptomyces beijiangensis

Strain history: CIP <- 2003, C.L. Jiang, Yunnan Univ., Kunming, China: strain YIM6 <- DSMZ <- CCTCC <- CCRC

NCBI tax ID(s): 163361 (species)

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General

@ref: 10579

BacDive-ID: 16366

DSM-Number: 41794

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Streptomyces beijiangensis DSM 41794 is an obligate aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 163361
  • Matching level: species

strain history

@refhistory
10579<- C.-L. Jiang, Yunnan Univ, Kunming; YIM6 <- CCTCC <- CCRC
67770DSM 41794 <-- C.-L. Jiang YIM6.
116779CIP <- 2003, C.L. Jiang, Yunnan Univ., Kunming, China: strain YIM6 <- DSMZ <- CCTCC <- CCRC

doi: 10.13145/bacdive16366.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces beijiangensis
  • full scientific name: Streptomyces beijiangensis Li et al. 2002

@ref: 10579

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces beijiangensis

full scientific name: Streptomyces beijiangensis Li et al. 2002

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotilitycell shape
125439positive99.8
12543993.8no
125438positive90.573
116779positivenorod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10579GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
38236MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulumyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
10579TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
116779CIP Medium 57yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57

culture temp

@refgrowthtypetemperature
10579positivegrowth28
38236positivegrowth30
67770positivegrowth20
116779positivegrowth10-37
116779nogrowth41
116779nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
116779obligate aerobe
125439obligate aerobe97.3

spore formation

  • @ref: 125438
  • spore formation: yes
  • confidence: 91.842

halophily

@refsaltgrowthtested relationconcentration
116779NaClpositivegrowth0 %
116779NaClnogrowth2 %
116779NaClnogrowth4 %
116779NaClnogrowth6 %
116779NaClnogrowth8 %
116779NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11677916947citrate-carbon source
1167794853esculin+hydrolysis
116779606565hippurate-hydrolysis
11677917632nitrate-reduction
11677916301nitrite-reduction
11677917632nitrate-respiration
68371Potassium 5-ketogluconate-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837112936D-galactose-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

metabolite production

  • @ref: 116779
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11677915688acetoin-
11677917234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
116779oxidase-
116779beta-galactosidase-3.2.1.23
116779alcohol dehydrogenase-1.1.1.1
116779gelatinase+
116779catalase+1.11.1.6
116779gamma-glutamyltransferase+2.3.2.2
116779lysine decarboxylase-4.1.1.18
116779ornithine decarboxylase-4.1.1.17
116779phenylalanine ammonia-lyase-4.3.1.24
116779tryptophan deaminase-
116779urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116779-+++-+----++-+---+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116779-----------------------------+/--------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
10579soilXinJiang Province, BeijiangChinaCHNAsia
67770SoilBeijiang, Xinjiang ProvinceChinaCHNAsia
116779Environment, SoilBeijingChinaCHNAsia1999

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
105791Risk group (German classification)
1167791Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
10579Streptomyces beijiangensis 16S ribosomal RNA gene, partial sequenceAF3856811499nuccore163361
67770Streptomyces beijiangensis gene for 16S rRNA, partial sequence, strain: NBRC 100044AB2499731465nuccore163361

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces beijiangensis DSM 41794GCA_017315755scaffoldncbi163361
66792Streptomyces beijiangensis strain DSM 41794163361.3wgspatric163361

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes90.573no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.846yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes84.603no
125438spore-formingspore-formingAbility to form endo- or exosporesyes91.842no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno97no
125438motile2+flagellatedAbility to perform flagellated movementno84.5no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes89
125439BacteriaNetmotilityAbility to perform movementno93.8
125439BacteriaNetgram_stainReaction to gram-stainingpositive99.8
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe97.3

External links

@ref: 10579

culture collection no.: DSM 41794, AS 4.1718, CCRC 16309, CCTCC 99005, JCM 11882, YIM 6, BCRC 16309, CGMCC 4.1718, CIP 107862, KCTC 9970, NBRC 100044

straininfo link

  • @ref: 85421
  • straininfo: 100111

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12361276Streptomyces beijiangensis sp. nov., a psychrotolerant actinomycete isolated from soil in China.Li WJ, Zhang LP, Xu P, Cui XL, Lu ZT, Xu LH, Jiang CLInt J Syst Evol Microbiol10.1099/00207713-52-5-16952002China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolismGenetics
Phylogeny21691776Streptomyces fildesensis sp. nov., a novel streptomycete isolated from Antarctic soil.Li J, Tian XP, Zhu TJ, Yang LL, Li WJAntonie Van Leeuwenhoek10.1007/s10482-011-9609-72011Antarctic Regions, Base Composition, DNA, Bacterial/genetics, Molecular Sequence Data, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolismGenetics
Phylogeny32556421Streptomyces boluensis sp. nov., isolated from lake sediment.Tokatli A, Idil O, Veyisoglu A, Saygin H, Guven K, Cetin D, Sahin NArch Microbiol10.1007/s00203-020-01901-32020Diaminopimelic Acid/analysis, Fatty Acids/analysis, Geologic Sediments/*microbiology, Lakes/*microbiology, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity, Streptomyces/chemistry/*classification/genetics/isolation & purification, Vitamin K 2/analysisEnzymology
Phylogeny34392062Streptomyces poriferorum sp. nov., a novel marine sponge-derived Actinobacteria species expressing anti-MRSA activity.Sandoval-Powers M, Kralova S, Nguyen GS, Fawwal DV, Degnes K, Lewin AS, Klinkenberg G, Wentzel A, Liles MRSyst Appl Microbiol10.1016/j.syapm.2021.1262442021Animals, *Antibiosis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Methicillin-Resistant Staphylococcus aureus, Multigene Family, Nucleic Acid Hybridization, Phylogeny, *Porifera/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/classification/isolation & purificationTranscriptome

Reference

@idauthorscataloguedoi/urltitle
10579Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41794)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41794
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
38236Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5420
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
85421Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100111.1StrainInfo: A central database for resolving microbial strain identifiers
116779Curators of the CIPCollection of Institut Pasteur (CIP 107862)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107862
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1