Strain identifier
BacDive ID: 16366
Type strain:
Species: Streptomyces beijiangensis
Strain history: CIP <- 2003, C.L. Jiang, Yunnan Univ., Kunming, China: strain YIM6 <- DSMZ <- CCTCC <- CCRC
NCBI tax ID(s): 163361 (species)
General
@ref: 10579
BacDive-ID: 16366
DSM-Number: 41794
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic
description: Streptomyces beijiangensis DSM 41794 is an obligate aerobe, spore-forming, mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 163361
- Matching level: species
strain history
@ref | history |
---|---|
10579 | <- C.-L. Jiang, Yunnan Univ, Kunming; YIM6 <- CCTCC <- CCRC |
67770 | DSM 41794 <-- C.-L. Jiang YIM6. |
116779 | CIP <- 2003, C.L. Jiang, Yunnan Univ., Kunming, China: strain YIM6 <- DSMZ <- CCTCC <- CCRC |
doi: 10.13145/bacdive16366.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces beijiangensis
- full scientific name: Streptomyces beijiangensis Li et al. 2002
@ref: 10579
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces beijiangensis
full scientific name: Streptomyces beijiangensis Li et al. 2002
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 92.445 | ||
69480 | 100 | positive | ||
116779 | no | positive | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
10579 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
38236 | MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum | yes | Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g) | |
10579 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
116779 | CIP Medium 57 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
10579 | positive | growth | 28 | mesophilic |
38236 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 20 | psychrophilic |
116779 | positive | growth | 10-37 | |
116779 | no | growth | 41 | thermophilic |
116779 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 116779
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 99 |
69480 | yes | 100 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
116779 | NaCl | positive | growth | 0 % |
116779 | NaCl | no | growth | 2 % |
116779 | NaCl | no | growth | 4 % |
116779 | NaCl | no | growth | 6 % |
116779 | NaCl | no | growth | 8 % |
116779 | NaCl | no | growth | 10 % |
observation
- @ref: 67770
- observation: quinones: MK-9(H6), MK-9(H8)
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
116779 | citrate | - | carbon source | 16947 |
116779 | esculin | + | hydrolysis | 4853 |
116779 | hippurate | - | hydrolysis | 606565 |
116779 | nitrate | - | reduction | 17632 |
116779 | nitrite | - | reduction | 16301 |
116779 | nitrate | - | respiration | 17632 |
metabolite production
- @ref: 116779
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
116779 | 15688 | acetoin | - | |
116779 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
116779 | oxidase | - | |
116779 | beta-galactosidase | - | 3.2.1.23 |
116779 | alcohol dehydrogenase | - | 1.1.1.1 |
116779 | gelatinase | + | |
116779 | catalase | + | 1.11.1.6 |
116779 | gamma-glutamyltransferase | + | 2.3.2.2 |
116779 | lysine decarboxylase | - | 4.1.1.18 |
116779 | ornithine decarboxylase | - | 4.1.1.17 |
116779 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
116779 | tryptophan deaminase | - | |
116779 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116779 | - | + | + | + | - | + | - | - | - | - | + | + | - | + | - | - | - | + | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116779 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
10579 | soil | XinJiang Province, Beijiang | China | CHN | Asia | |
67770 | Soil | Beijiang, Xinjiang Province | China | CHN | Asia | |
116779 | Environment, Soil | Beijing | China | CHN | Asia | 1999 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
10579 | 1 | Risk group (German classification) |
116779 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
10579 | Streptomyces beijiangensis 16S ribosomal RNA gene, partial sequence | AF385681 | 1499 | ena | 163361 |
67770 | Streptomyces beijiangensis gene for 16S rRNA, partial sequence, strain: NBRC 100044 | AB249973 | 1465 | ena | 163361 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptomyces beijiangensis DSM 41794 | GCA_017315755 | scaffold | ncbi | 163361 |
66792 | Streptomyces beijiangensis strain DSM 41794 | 163361.3 | wgs | patric | 163361 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 99 | no |
flagellated | no | 97.702 | no |
gram-positive | yes | 89.211 | no |
anaerobic | no | 99.352 | no |
aerobic | yes | 93.326 | no |
halophile | no | 95.039 | no |
spore-forming | yes | 94.211 | no |
thermophile | no | 99.432 | yes |
glucose-util | yes | 89.184 | no |
motile | no | 93.063 | no |
glucose-ferment | no | 86.37 | no |
External links
@ref: 10579
culture collection no.: DSM 41794, AS 4.1718, CCRC 16309, CCTCC 99005, JCM 11882, YIM 6, BCRC 16309, CGMCC 4.1718, CIP 107862, KCTC 9970, NBRC 100044
straininfo link
- @ref: 85421
- straininfo: 100111
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 12361276 | Streptomyces beijiangensis sp. nov., a psychrotolerant actinomycete isolated from soil in China. | Li WJ, Zhang LP, Xu P, Cui XL, Lu ZT, Xu LH, Jiang CL | Int J Syst Evol Microbiol | 10.1099/00207713-52-5-1695 | 2002 | China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolism | Genetics |
Phylogeny | 21691776 | Streptomyces fildesensis sp. nov., a novel streptomycete isolated from Antarctic soil. | Li J, Tian XP, Zhu TJ, Yang LL, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-011-9609-7 | 2011 | Antarctic Regions, Base Composition, DNA, Bacterial/genetics, Molecular Sequence Data, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolism | Genetics |
Phylogeny | 32556421 | Streptomyces boluensis sp. nov., isolated from lake sediment. | Tokatli A, Idil O, Veyisoglu A, Saygin H, Guven K, Cetin D, Sahin N | Arch Microbiol | 10.1007/s00203-020-01901-3 | 2020 | Diaminopimelic Acid/analysis, Fatty Acids/analysis, Geologic Sediments/*microbiology, Lakes/*microbiology, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity, Streptomyces/chemistry/*classification/genetics/isolation & purification, Vitamin K 2/analysis | Enzymology |
Phylogeny | 34392062 | Streptomyces poriferorum sp. nov., a novel marine sponge-derived Actinobacteria species expressing anti-MRSA activity. | Sandoval-Powers M, Kralova S, Nguyen GS, Fawwal DV, Degnes K, Lewin AS, Klinkenberg G, Wentzel A, Liles MR | Syst Appl Microbiol | 10.1016/j.syapm.2021.126244 | 2021 | Animals, *Antibiosis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Methicillin-Resistant Staphylococcus aureus, Multigene Family, Nucleic Acid Hybridization, Phylogeny, *Porifera/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Streptomyces/classification/isolation & purification | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
10579 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41794) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41794 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
38236 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5420 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68371 | Automatically annotated from API 50CH acid | |||
68382 | Automatically annotated from API zym | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
85421 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100111.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
116779 | Curators of the CIP | Collection of Institut Pasteur (CIP 107862) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107862 |