Strain identifier

BacDive ID: 16365

Type strain: Yes

Species: Streptomyces yunnanensis

Strain Designation: CGLCC 4.1004

Strain history: CIP <- 2003, W.J. Li, Yunnan Univ., Kunming, China: strain YIM 41004 <- DSMZ <- CCRC <- CGMCC

NCBI tax ID(s): 156453 (species)

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General

@ref: 10578

BacDive-ID: 16365

DSM-Number: 41793

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic

description: Streptomyces yunnanensis CGLCC 4.1004 is an obligate aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 156453
  • Matching level: species

strain history

@refhistory
10578<- C.-L. Jiang, YIM <- CGMCC <- CCRC
67770AS 4.1004 <-- C.-L. Jiang YIM 41004.
124020CIP <- 2003, W.J. Li, Yunnan Univ., Kunming, China: strain YIM 41004 <- DSMZ <- CCRC <- CGMCC

doi: 10.13145/bacdive16365.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces yunnanensis
  • full scientific name: Streptomyces yunnanensis Zhang et al. 2003

@ref: 10578

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces yunnanensis

full scientific name: Streptomyces yunnanensis Zhang et al. 2003

strain designation: CGLCC 4.1004

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no94.568
69480100positive
124020nopositivefilament-shaped

colony morphology

  • @ref: 124020

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10578GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
38248MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
10578ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
124020CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
10578positivegrowth28mesophilic
38248positivegrowth30mesophilic
67770positivegrowth28mesophilic
124020positivegrowth25-37mesophilic
124020nogrowth10psychrophilic
124020nogrowth41thermophilic
124020nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 124020
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

halophily

@refsaltgrowthtested relationconcentration
124020NaClpositivegrowth0 %
124020NaClnogrowth2 %
124020NaClnogrowth4 %
124020NaClnogrowth6 %
124020NaClnogrowth8 %
124020NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
124020citrate-carbon source16947
124020esculin-hydrolysis4853
124020hippurate+hydrolysis606565
124020nitrate-reduction17632
124020nitrite-reduction16301
124020nitrate-respiration17632

antibiotic resistance

  • @ref: 124020
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 124020
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12402015688acetoin-
12402017234glucose-

enzymes

@refvalueactivityec
124020oxidase-
124020beta-galactosidase+3.2.1.23
124020alcohol dehydrogenase-1.1.1.1
124020gelatinase+
124020amylase+
124020DNase-
124020caseinase-3.4.21.50
124020catalase+1.11.1.6
124020tween esterase-
124020gamma-glutamyltransferase+2.3.2.2
124020lecithinase-
124020lipase-
124020lysine decarboxylase-4.1.1.18
124020ornithine decarboxylase-4.1.1.17
124020phenylalanine ammonia-lyase-4.3.1.24
124020protease+
124020tryptophan deaminase-
124020urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
124020--++-++-++++-----+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
124020------------------------+/-------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
124020+++++++++++++++-++++++-++-+--+++++--++----+++---+++--+++---++-----------++-+---++-+-+----++++++---+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
10578soilYunnan Province, The suburb of KunmingChinaCHNAsia
67770Red soil of suburb of KunmingYunnanChinaCHNAsia
124020Environment, SoilKunming, YunnanChinaCHNAsia1980

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
105781Risk group (German classification)
1240201Risk group (French classification)

Sequence information

16S sequences

  • @ref: 10578
  • description: Streptomyces yunnanensis 16S ribosomal RNA gene, partial sequence
  • accession: AF346818
  • length: 1521
  • database: ena
  • NCBI tax ID: 156453

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces yunnanensis strain CGMCC 4.3555156453.3wgspatric156453
66792Streptomyces yunnanensis CGMCC 4.35552667527450draftimg156453
67770Streptomyces yunnanensis CGMCC 4.3555GCA_900142595scaffoldncbi156453

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno93.599no
gram-positiveyes90.587no
anaerobicno99.117no
aerobicyes92.351no
halophileno93.908no
spore-formingyes96.137no
thermophileno98.197no
glucose-utilyes90.84no
flagellatedno98.015no
glucose-fermentno91.115no

External links

@ref: 10578

culture collection no.: DSM 41793, CCRC 16301, CGMCC 4.1004, YIM 41004, JCM 12115, BCRC 16301, CGMCC 4.3555, CIP 107977, KCTC 9969, NBRC 100781, NRRL B-24306

straininfo link

  • @ref: 85420
  • straininfo: 100981

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12656176Streptomyces yunnanensis sp. nov., a mesophile from soils in Yunnan, China.Zhang Q, Li WJ, Cui XL, Li MG, Xu LH, Jiang CLInt J Syst Evol Microbiol10.1099/ijs.0.01851-02003Base Sequence, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Microscopy, Electron, Scanning, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolismGenetics
Phylogeny19060056Streptomyces lunalinharesii sp. nov., a chitinolytic streptomycete isolated from cerrado soil in Brazil.de Souza RF, Coelho RR, Macrae A, Soares RM, Nery Dda C, Semedo LT, Alviano CS, Gomes RCInt J Syst Evol Microbiol10.1099/ijs.0.65768-02008Brazil, Chitin/*metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity, Streptomyces/*classification/genetics/*physiologyGenetics

Reference

@idauthorscataloguedoi/urltitle
10578Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41793)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41793
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
38248Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5547
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85420Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100981.1StrainInfo: A central database for resolving microbial strain identifiers
124020Curators of the CIPCollection of Institut Pasteur (CIP 107977)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107977