Strain identifier

BacDive ID: 1636

Type strain: Yes

Species: Bartonella birtlesii

Strain history: CIP <- 1999, D. Bermond, Louis Pasteur Univ., Strasbourg, France: strain IBS 325

NCBI tax ID(s): 1095900 (strain), 111504 (species)

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General

@ref: 15722

BacDive-ID: 1636

DSM-Number: 21463

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped, animal pathogen

description: Bartonella birtlesii DSM 21463 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from Apodemus sp..

NCBI tax id

NCBI tax idMatching level
1095900strain
111504species

strain history

@refhistory
15722<- CIP; IBS 325 {2008} <- D. Bermond, ULP, Strasbourg, France
403001999, D. Bermond, ULP, Strasbourg, France: strain IBS 325
116822CIP <- 1999, D. Bermond, Louis Pasteur Univ., Strasbourg, France: strain IBS 325

doi: 10.13145/bacdive1636.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Bartonellaceae
  • genus: Bartonella
  • species: Bartonella birtlesii
  • full scientific name: Bartonella birtlesii Bermond et al. 2000

@ref: 15722

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Bartonellaceae

genus: Bartonella

species: Bartonella birtlesii

full scientific name: Bartonella birtlesii Bermond et al. 2000

type strain: yes

Morphology

cell morphology

  • @ref: 116822
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refincubation periodcolony colorcolony shapemedium used
157222-3 days
2314410 daysgrey-whitecircularblood agar
562763 days
116822

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15722COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
23144blood agaryes
40300MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
116822CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6
116822CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
15722positivegrowth37mesophilic
23144positivegrowth35mesophilic
40300positivegrowth37mesophilic
116822positivegrowth25-37mesophilic
116822nogrowth10psychrophilic
116822nogrowth15psychrophilic
116822nogrowth41thermophilic
116822nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15722microaerophile
56276microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
23144506227N-acetylglucosamine-hydrolysis
2314427082trehalose-hydrolysis
231443122bis-4-nitrophenyl phosphate+hydrolysis
2314429016arginine+other
2314415428glycine+other
2314425017leucine+other
2314425094lysine+other
2314416811methionine+other
2314426271proline+other
2314427897tryptophan+other
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
1168224853esculin-hydrolysis
116822606565hippurate+hydrolysis
11682217632nitrate-reduction
11682216301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
2314415688acetoinno
11682235581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
2314415688acetoin-
11682215688acetoin-
11682217234glucose-

enzymes

@refvalueactivityec
23144catalase-1.11.1.6
23144cytochrome oxidase-1.9.3.1
23144urease-3.5.1.5
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
116822oxidase-
116822beta-galactosidase-3.2.1.23
116822alcohol dehydrogenase-1.1.1.1
116822gelatinase-
116822catalase-1.11.1.6
116822gamma-glutamyltransferase-2.3.2.2
116822lysine decarboxylase-4.1.1.18
116822ornithine decarboxylase-4.1.1.17
116822phenylalanine ammonia-lyase-4.3.1.24
116822tryptophan deaminase-
116822urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    56276C14:00.514
    56276C15:00.715
    56276C16:016.816
    56276C17:02.117
    56276C18:018.518
    56276C12:0 3OH0.413.455
    56276C16:1 ω7c0.515.819
    56276C17:1 ω6c0.416.862
    56276C18:1 ω5c0.417.919
    56276C18:1 ω7c /12t/9t43.517.824
    56276C18:1 ω9c0.817.769
    56276C18:2 ω6,9c/C18:0 ANTE217.724
    56276Unidentified2.816.296
    56276Unidentified0.417.303
    56276Unidentified0.518.097
    56276Unidentified5.418.146
    56276Unidentified4.418.315
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116822-++--+-----+---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116822-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentsampling dateisolation date
15722Apodemus sp.ApodemusGerstheimFranceFRAEurope
56276Apodemus sp.FranceFRAEurope1997
116822Apodemus sp.GerstheimFranceFRAEurope1997

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Muridae (Mouse/Rat)

taxonmaps

  • @ref: 69479
  • File name: preview.99_972.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_247;97_656;98_758;99_972&stattab=map
  • Last taxonomy: Bartonella
  • 16S sequence: AF204274
  • Sequence Identity:
  • Total samples: 1497
  • soil counts: 187
  • aquatic counts: 669
  • animal counts: 589
  • plant counts: 52

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
15722yes2Risk group (German classification)
1168222Risk group (French classification)

Sequence information

16S sequences

  • @ref: 15722
  • description: Bartonella birtlesii 16S ribosomal RNA gene, partial sequence
  • accession: AF204274
  • length: 1401
  • database: ena
  • NCBI tax ID: 111504

External links

@ref: 15722

culture collection no.: DSM 21463, CCUG 44360, CIP 106294, IBS 325

straininfo link

  • @ref: 71283
  • straininfo: 67567

literature

  • topic: Phylogeny
  • Pubmed-ID: 11155970
  • title: Bartonella birtlesii sp. nov., isolated from small mammals (Apodemus spp.).
  • authors: Bermond D, Heller R, Barrat F, Delacour G, Dehio C, Alliot A, Monteil H, Chomel B, Boulouis HJ, Piemont Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-50-6-1973
  • year: 2000
  • mesh: Animals, Bacterial Typing Techniques, Bartonella/*classification/genetics/*isolation & purification, Bartonella Infections/microbiology/*veterinary, Citrate (si)-Synthase/genetics, Genes, rRNA/genetics, Molecular Sequence Data, Muridae/*microbiology, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Rodent Diseases/*microbiology, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15722Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21463)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21463
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23144D Bermond, R Heller, F Barrat, G Delacour, C Dehio, A Alliot, H Monteil, B Chomel, H J Boulouis, Y Piémont10.1099/00207713-50-6-1973Bartonella birtlesii sp. nov., isolated from small mammals (Apodemus spp.)IJSEM 50: 1973-1979 200011155970
40300Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18408
56276Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 44360)https://www.ccug.se/strain?id=44360
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71283Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID67567.1StrainInfo: A central database for resolving microbial strain identifiers
116822Curators of the CIPCollection of Institut Pasteur (CIP 106294)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106294