Strain identifier

BacDive ID: 16350

Type strain: Yes

Species: Streptomyces thermocoprophilus

Strain Designation: B-19

Strain history: DSM 41700 <-- M. Goodfellow B-19.

NCBI tax ID(s): 78356 (species)

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General

@ref: 10480

BacDive-ID: 16350

DSM-Number: 41700

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces thermocoprophilus B-19 is a mesophilic bacterium that was isolated from sample of poultry faeces obtained from poultry farm.

NCBI tax id

  • NCBI tax id: 78356
  • Matching level: species

strain history

@refhistory
10480<- M. Goodfellow, B-19
67770DSM 41700 <-- M. Goodfellow B-19.

doi: 10.13145/bacdive16350.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces thermocoprophilus
  • full scientific name: Streptomyces thermocoprophilus Kim et al. 2000

@ref: 10480

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces thermocoprophilus

full scientific name: Streptomyces thermocoprophilus Kim et al. 2000

strain designation: B-19

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10480GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10480OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)yeshttps://mediadive.dsmz.de/medium/248Name: OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) Composition: Agar 20.0 g/l Oat flakes 20.0 g/l Yeast extract 2.0 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
10480STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10480positivegrowth28mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8), MK-9(H6), MK-9(H4)

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
10480sample of poultry faeces obtained from poultry farmMalaysiaMYSAsia
67770Poultry fecesMalaysiaMYSAsiaUniversity of Malaya

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Livestock (Husbandry)
#Host#Birds
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 10480
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces thermocoprophilus strain B19, 16S rRNA geneAJ0074021499ena78356
20218Streptomyces thermocoprophilus gene for 16S rRNA, partial sequence, strain: NBRC 100771AB2499381483ena78356

GC content

  • @ref: 67770
  • GC-content: 68.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 10480

culture collection no.: DSM 41700, JCM 10918, CGMCC 4.1954, KACC 20183, KCTC 9935, NBRC 100771, NRRL B-24314

straininfo link

  • @ref: 85405
  • straininfo: 50055

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10480Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41700)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41700
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
85405Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50055.1StrainInfo: A central database for resolving microbial strain identifiers