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Strain identifier

BacDive ID: 16349

Type strain: Yes

Species: Streptomyces malaysiensis

Strain Designation: ATB-11

Strain history: DSM 41697 <-- M. Goodfellow ATB-11 <-- A. Al-Tai.

NCBI tax ID(s): 92644 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 10479

BacDive-ID: 16349

DSM-Number: 41697

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces malaysiensis ATB-11 is a mesophilic bacterium that was isolated from soil sample from Tasek Bera.

NCBI tax id

  • NCBI tax id: 92644
  • Matching level: species

strain history

doi: 10.13145/bacdive16349.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptomycetales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces malaysiensis
  • full scientific name: Streptomyces malaysiensis Al-Tai et al. 1999

@ref: 10479

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces malaysiensis

full scientific name: Streptomyces malaysiensis Al-Tai et al. 1999

strain designation: ATB-11

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10479GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
10479STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
10479OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)yeshttps://mediadive.dsmz.de/medium/248Name: OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) Composition: Agar 20.0 g/l Oat flakes 20.0 g/l Yeast extract 2.0 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
10479positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
10479soil sample from Tasek BeraPahang StateMalaysiaMYSAsia
67770SoilTasek Bera, Pahang ProvinceMalaysiaMYSAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_4620.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_2792;98_3469;99_4620&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: AB249918
  • Sequence Identity:
  • Total samples: 461
  • soil counts: 292
  • aquatic counts: 46
  • animal counts: 25
  • plant counts: 98

Safety information

risk assessment

  • @ref: 10479
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces malaysiensis 16S ribosomal RNA, partial sequenceAF1173041475ena92644
20218Streptomyces malaysiensis gene for 16S rRNA, partial sequence, strain: NBRC 16446AB2499181445ena92644

GC content

  • @ref: 67770
  • GC-content: 72.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 10479

culture collection no.: DSM 41697, ATCC BAA 13, JCM 10672, CGMCC 4.1900, IFO 16446, KCTC 9934, NBRC 16446, NCIMB 14455

straininfo link

@refpassport
20218http://www.straininfo.net/strains/118828
20218http://www.straininfo.net/strains/118827
20218http://www.straininfo.net/strains/118830

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10555318Streptomyces malaysiensis sp. nov., a new streptomycete species with rugose, ornamented spores.al-Tai A, Kim B, Kim SB, Manfio GP, Goodfellow MInt J Syst Bacteriol10.1099/00207713-49-4-13951999Bacterial Typing Techniques, DNA, Ribosomal/genetics, Genes, rRNA, Molecular Sequence Data, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/physiology, Streptomyces/chemistry/*classification/*genetics/physiologyGenetics
Phylogeny20656824Streptomyces samsunensis sp. nov., a member of the Streptomyces violaceusniger clade isolated from the rhizosphere of Robinia pseudoacacia.Sazak A, Sahin N, Guven K, Isik K, Goodfellow MInt J Syst Evol Microbiol10.1099/ijs.0.021329-02010Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Robinia/growth & development, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purificationGenetics
Pathogenicity27554496Investigation on antimicrobial agents of the terrestrial Streptomyces sp. BCC71188.Supong K, Sripreechasak P, Tanasupawat S, Danwisetkanjana K, Rachtawee P, Pittayakhajonwut PAppl Microbiol Biotechnol10.1007/s00253-016-7804-12016Animals, Anti-Infective Agents/chemistry/isolation & purification/*metabolism, Bacillus cereus/drug effects, Biological Products/chemistry/isolation & purification/*metabolism, Cell Line, Cell Survival/drug effects, Cell Wall/chemistry, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Humans, Inhibitory Concentration 50, Microbial Sensitivity Tests, Microscopy, Mycobacterium tuberculosis/drug effects, Plasmodium falciparum/drug effects, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/classification/genetics/isolation & purification/*metabolismPhylogeny
Phylogeny28260703Streptomyces cameroonensis sp. nov., a Geldanamycin Producer That Promotes Theobroma cacao Growth.Boudjeko T, Tchinda RA, Zitouni M, Nana JA, Lerat S, Beaulieu CMicrobes Environ10.1264/jsme2.ME160952017Anti-Infective Agents/*metabolism, Antibiosis, Bacterial Typing Techniques, Benzoquinones/*metabolism, Cacao/*growth & development/*microbiology, Cameroon, Chromolaena/microbiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Lactams, Macrocyclic/*metabolism, Microscopy, Electron, Scanning, Nucleic Acid Hybridization, Phylogeny, Phytophthora/growth & development, Plant Growth Regulators/metabolism, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolismMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10479Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41697)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41697
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta