Strain identifier
BacDive ID: 16349
Type strain: 
Species: Streptomyces malaysiensis
Strain Designation: ATB-11
Strain history: DSM 41697 <-- M. Goodfellow ATB-11 <-- A. Al-Tai.
NCBI tax ID(s): 92644 (species)
version 8.1 (current version)
General
@ref: 10479
BacDive-ID: 16349
DSM-Number: 41697
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces malaysiensis ATB-11 is a mesophilic bacterium that was isolated from soil sample from Tasek Bera.
NCBI tax id
- NCBI tax id: 92644
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10479 | <- M. Goodfellow, ATB-11 <- A. Al-Tai, University of Malaya |
| 67770 | DSM 41697 <-- M. Goodfellow ATB-11 <-- A. Al-Tai. |
doi: 10.13145/bacdive16349.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces malaysiensis
- full scientific name: Streptomyces malaysiensis Al-Tai et al. 1999
@ref: 10479
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces malaysiensis
full scientific name: Streptomyces malaysiensis Al-Tai et al. 1999
strain designation: ATB-11
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10479 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 10479 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
| 10479 | OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) | yes | https://mediadive.dsmz.de/medium/248 | Name: OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) Composition: Agar 20.0 g/l Oat flakes 20.0 g/l Yeast extract 2.0 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 10479 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H6)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 10479 | soil sample from Tasek Bera | Pahang State | Malaysia | MYS | Asia |
| 67770 | Soil | Tasek Bera, Pahang Province | Malaysia | MYS | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_4620.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_2792;98_3469;99_4620&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: AB249918
- Sequence Identity:
- Total samples: 461
- soil counts: 292
- aquatic counts: 46
- animal counts: 25
- plant counts: 98
Safety information
risk assessment
- @ref: 10479
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Streptomyces malaysiensis 16S ribosomal RNA, partial sequence | AF117304 | 1475 | ena | 92644 |
| 20218 | Streptomyces malaysiensis gene for 16S rRNA, partial sequence, strain: NBRC 16446 | AB249918 | 1445 | ena | 92644 |
GC content
- @ref: 67770
- GC-content: 72.2
- method: high performance liquid chromatography (HPLC)
External links
@ref: 10479
culture collection no.: DSM 41697, ATCC BAA 13, JCM 10672, CGMCC 4.1900, IFO 16446, KCTC 9934, NBRC 16446, NCIMB 14455
straininfo link
- @ref: 85404
- straininfo: 44254
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 10555318 | Streptomyces malaysiensis sp. nov., a new streptomycete species with rugose, ornamented spores. | al-Tai A, Kim B, Kim SB, Manfio GP, Goodfellow M | Int J Syst Bacteriol | 10.1099/00207713-49-4-1395 | 1999 | Bacterial Typing Techniques, DNA, Ribosomal/genetics, Genes, rRNA, Molecular Sequence Data, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spores, Bacterial/physiology, Streptomyces/chemistry/*classification/*genetics/physiology | Genetics |
| Phylogeny | 20656824 | Streptomyces samsunensis sp. nov., a member of the Streptomyces violaceusniger clade isolated from the rhizosphere of Robinia pseudoacacia. | Sazak A, Sahin N, Guven K, Isik K, Goodfellow M | Int J Syst Evol Microbiol | 10.1099/ijs.0.021329-0 | 2010 | Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Robinia/growth & development, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification | Genetics |
| Pathogenicity | 27554496 | Investigation on antimicrobial agents of the terrestrial Streptomyces sp. BCC71188. | Supong K, Sripreechasak P, Tanasupawat S, Danwisetkanjana K, Rachtawee P, Pittayakhajonwut P | Appl Microbiol Biotechnol | 10.1007/s00253-016-7804-1 | 2016 | Animals, Anti-Infective Agents/chemistry/isolation & purification/*metabolism, Bacillus cereus/drug effects, Biological Products/chemistry/isolation & purification/*metabolism, Cell Line, Cell Survival/drug effects, Cell Wall/chemistry, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Humans, Inhibitory Concentration 50, Microbial Sensitivity Tests, Microscopy, Mycobacterium tuberculosis/drug effects, Plasmodium falciparum/drug effects, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/classification/genetics/isolation & purification/*metabolism | Phylogeny |
| Phylogeny | 28260703 | Streptomyces cameroonensis sp. nov., a Geldanamycin Producer That Promotes Theobroma cacao Growth. | Boudjeko T, Tchinda RA, Zitouni M, Nana JA, Lerat S, Beaulieu C | Microbes Environ | 10.1264/jsme2.ME16095 | 2017 | Anti-Infective Agents/*metabolism, Antibiosis, Bacterial Typing Techniques, Benzoquinones/*metabolism, Cacao/*growth & development/*microbiology, Cameroon, Chromolaena/microbiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Lactams, Macrocyclic/*metabolism, Microscopy, Electron, Scanning, Nucleic Acid Hybridization, Phylogeny, Phytophthora/growth & development, Plant Growth Regulators/metabolism, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolism | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10479 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41697) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-41697 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 85404 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID44254.1 | StrainInfo: A central database for resolving microbial strain identifiers |