Strain identifier
BacDive ID: 163413
Type strain: 
Species: Pseudomonas aeruginosa
Strain history: K. Komagata KS 0024 <-- AJ 2115 <-- IAM 1275 <-- ATCC 7700 <-- W. C. Tobie; Am. Cyanamid Co., USA; 140.
NCBI tax ID(s): 287 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163413
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Pseudomonas aeruginosa JCM 2776 is a mesophilic, Gram-negative bacterium of the family Pseudomonadaceae.
NCBI tax id
- NCBI tax id: 287
- Matching level: species
strain history
- @ref: 67770
- history: K. Komagata KS 0024 <-- AJ 2115 <-- IAM 1275 <-- ATCC 7700 <-- W. C. Tobie; Am. Cyanamid Co., USA; 140.
doi: 10.13145/bacdive163413.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas aeruginosa
- full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium aeruginosum
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas aeruginosa
full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 99.991 | |
| 69480 | 99.326 | yes |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.943 |
| 69481 | no | 100 |
observation
- @ref: 67770
- observation: quinones: Q-9
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_42.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_36;97_37;98_40;99_42&stattab=map
- Last taxonomy: Pseudomonas aeruginosa
- 16S sequence: AB594757
- Sequence Identity:
- Total samples: 22757
- soil counts: 1669
- aquatic counts: 5046
- animal counts: 14748
- plant counts: 1294
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Pseudomonas aeruginosa gene for 16S rRNA, partial sequence, strain: JCM 2776 | AB594757 | 1458 | ena | 287 |
| 67770 | Pseudomonas aeruginosa gene for 16S rRNA, partial sequence, strain: NBRC 3899 | AB680164 | 1461 | ena | 287 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudomonas aeruginosa NCTC7244 | GCA_900455295 | contig | ncbi | 287 |
| 66792 | Pseudomonas aeruginosa strain NCTC7244 | 287.6515 | wgs | patric | 287 |
| 66792 | Pseudomonas aeruginosa American Cyanamid Co. 140, ATCC 7700 | 2510461030 | draft | img | 287 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.421 | no |
| anaerobic | no | 98.537 | no |
| halophile | no | 91.151 | no |
| spore-forming | no | 93.259 | no |
| glucose-util | yes | 89.628 | no |
| motile | yes | 90.082 | no |
| flagellated | yes | 85.748 | no |
| aerobic | yes | 94.078 | no |
| thermophile | no | 99.805 | yes |
| glucose-ferment | no | 90.207 | no |
External links
@ref: 67770
culture collection no.: JCM 2776, AJ 2115, ATCC 7700, IAM 1275, IAM 13076, IFO 3899, NBRC 3899, NCTC 7244, NRRL B-23
straininfo link
- @ref: 114070
- straininfo: 3883
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 4382249 | Adenosine triphosphate-linked control of Pseudomonas aeruginosa glucose-6-phosphate dehydrogenase. | Lessie T, Neidhardt FC | J Bacteriol | 10.1128/jb.93.4.1337-1345.1967 | 1967 | Adenosine Triphosphate/*pharmacology, Aldehyde-Lyases/metabolism, Centrifugation, Density Gradient, Chromatography, Gel, Enzyme Induction, Fructose-Bisphosphate Aldolase/metabolism, Gluconates/pharmacology, Glucose/metabolism/pharmacology, Glucosephosphate Dehydrogenase/*biosynthesis, Glycerol/pharmacology, Guanine Nucleotides/pharmacology, Hydro-Lyases/metabolism, NAD/metabolism, NADP/metabolism, Phosphogluconate Dehydrogenase/metabolism, Phosphotransferases/metabolism, Pseudomonas aeruginosa/*enzymology/metabolism, Succinates/pharmacology | Enzymology |
| Pathogenicity | 18825530 | Synthesis and biological activities of new hydrazide derivatives. | Ozdemir A, Turan-Zitouni G, Kaplancikli ZA, Tunali Y | J Enzyme Inhib Med Chem | 10.1080/14756360802399712 | 2009 | Anti-Infective Agents/*chemical synthesis/chemistry/*pharmacology, Antitubercular Agents/chemical synthesis/chemistry/pharmacology, Bacteria/*drug effects, Fungi/*drug effects, Humans, Hydrazines/*chemical synthesis/chemistry/*pharmacology, Imidazoles/chemistry/pharmacology, Magnetic Resonance Spectroscopy, Mass Spectrometry, Microbial Sensitivity Tests, Mycobacterium tuberculosis/*drug effects, Structure-Activity Relationship, Turkey | |
| Pathogenicity | 23731467 | A screening for antimicrobial activities of Caribbean herbal remedies. | Luciano-Montalvo C, Boulogne I, Gavillan-Suarez J | BMC Complement Altern Med | 10.1186/1472-6882-13-126 | 2013 | Anti-Infective Agents/*pharmacology, Bacteria/drug effects, Bacterial Infections/drug therapy/microbiology, Caribbean Region, Drug Evaluation, Preclinical, Humans, Microbial Sensitivity Tests, Plant Extracts/*pharmacology, Plants, Medicinal/*chemistry |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 114070 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID3883.1 |