Strain identifier
BacDive ID: 163333
Type strain:
Species: Acetobacter okinawensis
Strain history: NRIC 0658 <-- P. Lisdiyanti 1-35.
NCBI tax ID(s): 1236501 (strain), 1076594 (species)
General
@ref: 67770
BacDive-ID: 163333
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Acetobacter okinawensis JCM 25146 is a mesophilic bacterium that was isolated from Sugarcane in Okinawa,.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1236501 | strain |
1076594 | species |
strain history
- @ref: 67770
- history: NRIC 0658 <-- P. Lisdiyanti 1-35.
doi: 10.13145/bacdive163333.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter okinawensis
- full scientific name: Acetobacter okinawensis Iino et al. 2013
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter okinawensis
full scientific name: Acetobacter okinawensis Iino et al. 2013
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-9
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sugarcane (stem) (Saccharum offcinarum) in Okinawa,(2004)
- host species: Saccharum offcinarum
- sampling date: 2004
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_1246.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_163;98_985;99_1246&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: AB665068
- Sequence Identity:
- Total samples: 3246
- soil counts: 352
- aquatic counts: 428
- animal counts: 2157
- plant counts: 309
Sequence information
16S sequences
- @ref: 67770
- description: Acetobacter okinawensis gene for 16S rRNA, partial sequence
- accession: AB665068
- length: 1412
- database: ena
- NCBI tax ID: 1236501
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acetobacter okinawensis JCM 25146 | 1236501.3 | wgs | patric | 1236501 |
66792 | Acetobacter okinawensis JCM 25146 | 2579778976 | draft | img | 1236501 |
67770 | Acetobacter okinawensis JCM 25146 | GCA_000613865 | contig | ncbi | 1236501 |
GC content
- @ref: 67770
- GC-content: 59.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 78.855 | no |
gram-positive | no | 97.865 | no |
anaerobic | no | 98.274 | no |
aerobic | yes | 90.9 | no |
halophile | no | 93.311 | no |
spore-forming | no | 96.071 | no |
glucose-util | yes | 77.929 | no |
flagellated | no | 82.666 | no |
thermophile | no | 96.775 | yes |
glucose-ferment | no | 90.81 | no |
External links
@ref: 67770
culture collection no.: JCM 25146, KACC 19723, LMG 26457, NBRC 111467, NRIC 0658
straininfo link
- @ref: 114030
- straininfo: 377579
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
114030 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID377579.1 |