Strain identifier

BacDive ID: 163333

Type strain: Yes

Species: Acetobacter okinawensis

Strain history: NRIC 0658 <-- P. Lisdiyanti 1-35.

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General

@ref: 67770

BacDive-ID: 163333

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Acetobacter okinawensis JCM 25146 is a mesophilic bacterium that was isolated from Sugarcane in Okinawa,.

NCBI tax id

NCBI tax idMatching level
1076594species
1236501strain

strain history: NRIC 0658 <-- P. Lisdiyanti 1-35.

doi: 10.13145/bacdive163333.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter okinawensis
  • full scientific name: Acetobacter okinawensis Iino et al. 2013

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter okinawensis

full scientific name: Acetobacter okinawensis Iino et al. 2013

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-9

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Sugarcane (stem) (Saccharum offcinarum) in Okinawa,(2004)
  • host species: Saccharum offcinarum
  • sampling date: 2004
  • country: Japan
  • origin.country: JPN
  • continent: Asia

Sequence information

16S sequences

  • @ref: 67770
  • description: Acetobacter okinawensis gene for 16S rRNA, partial sequence
  • accession: AB665068
  • length: 1412
  • database: ena
  • NCBI tax ID: 1236501

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter okinawensis JCM 25146 JCM 25146GCA_000613865contigncbi1236501
66792Acetobacter okinawensis JCM 251461236501.3wgspatric1236501
66792Acetobacter okinawensis JCM 251462579778976draftimg1236501
67770Acetobacter okinawensis JCM 25146, whole genome shotgun sequencing projectBAJU00000000ncbi1236501

GC content

  • @ref: 67770
  • GC-content: 59.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 25146, KACC 19723, LMG 26457, NBRC 111467, NRIC 0658

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/