Strain identifier

BacDive ID: 163302

Type strain: Yes

Species: Acetobacter pasteurianus

Strain history: TUA 851B <-- LMG 1590 <-- LMD 51.1 <-- S. Soriano <-- W. Henneberg.

NCBI tax ID(s): 481146 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
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General

@ref: 67770

BacDive-ID: 163302

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Acetobacter pasteurianus JCM 25076 is a mesophilic, Gram-negative bacterium of the family Acetobacteraceae.

NCBI tax id

  • NCBI tax id: 481146
  • Matching level: species

strain history

  • @ref: 67770
  • history: TUA 851B <-- LMG 1590 <-- LMD 51.1 <-- S. Soriano <-- W. Henneberg.

doi: 10.13145/bacdive163302.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter pasteurianus
  • full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Bacterium ascendens
    20215Acetobacter ascendens
    20215Acetobacter pasteurianus subsp. paradoxus
    20215Acetobacter peroxydans
    20215Mycoderma pasteurianum
    20215Acetobacter paradoxus
    20215Acetobacter paradoxum
    20215Acetobacter pasteurianus subsp. ascendens

@ref: 67770

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter ascendens

full scientific name: Acetobacter ascendens (Henneberg 1898) Kim et al. 2020

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.997

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.996
69481no100

observation

  • @ref: 67770
  • observation: quinones: Q-9

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_214.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_163;98_182;99_214&stattab=map
  • Last taxonomy: Acetobacter
  • 16S sequence: GU205099
  • Sequence Identity:
  • Total samples: 12367
  • soil counts: 1742
  • aquatic counts: 1945
  • animal counts: 7743
  • plant counts: 937

Sequence information

16S sequences

  • @ref: 67770
  • description: Acetobacter pasteurianus subsp. ascendens strain LMG 1590 16S ribosomal RNA gene, partial sequence
  • accession: GU205099
  • length: 1480
  • database: ena
  • NCBI tax ID: 481146

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter ascendens LMG 1590GCA_001766235completencbi481146
66792Acetobacter pasteurianus subsp. ascendens strain LMG 1590481146.6plasmidpatric481146
66792Acetobacter pasteurianus subsp. ascendens strain LMG 1590481146.3completepatric481146
66792Acetobacter pasteurianus subsp. ascendens strain LMG 1590481146.7plasmidpatric481146
66792Acetobacter pasteurianus subsp. ascendens strain LMG 1590481146.8plasmidpatric481146
66792Acetobacter ascendens ascendens LMG 15902663762691draftimg481146

GC content

  • @ref: 67770
  • GC-content: 52.9
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno98.001no
gram-positiveno96.003no
anaerobicno98.648no
aerobicyes84.852no
halophileno88.254no
spore-formingno94.737no
glucose-utilyes72.314no
thermophileno96.059yes
motileno90.998no
glucose-fermentno88.281no

External links

@ref: 67770

culture collection no.: JCM 25076, LMG 1590

straininfo link

  • @ref: 114018
  • straininfo: 14582

literature

  • topic: Phylogeny
  • Pubmed-ID: 29655875
  • title: Acetobacter oryzifermentans sp. nov., isolated from Korean traditional vinegar and reclassification of the type strains of Acetobacter pasteurianus subsp. ascendens (Henneberg 1898) and Acetobacter pasteurianus subsp. paradoxus (Frateur 1950) as Acetobacter ascendens sp. nov., comb. nov.
  • authors: Kim KH, Cho GY, Chun BH, Weckx S, Moon JY, Yeo SH, Jeon CO
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2018.03.003
  • year: 2018
  • mesh: *Acetic Acid, Acetobacter/*classification/*genetics/isolation & purification, Bacterial Typing Techniques/*methods, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
114018Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID14582.1