Strain identifier
BacDive ID: 163302
Type strain: 
Species: Acetobacter pasteurianus
Strain history: TUA 851B <-- LMG 1590 <-- LMD 51.1 <-- S. Soriano <-- W. Henneberg.
NCBI tax ID(s): 481146 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 163302
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Acetobacter pasteurianus JCM 25076 is a mesophilic, Gram-negative bacterium of the family Acetobacteraceae.
NCBI tax id
- NCBI tax id: 481146
- Matching level: species
strain history
- @ref: 67770
- history: TUA 851B <-- LMG 1590 <-- LMD 51.1 <-- S. Soriano <-- W. Henneberg.
doi: 10.13145/bacdive163302.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter pasteurianus
- full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)
synonyms
@ref synonym 20215 Acetobacter peroxydans 20215 Acetobacter paradoxus 20215 Acetobacter paradoxum 20215 Acetobacter pasteurianus subsp. ascendens 20215 Bacterium ascendens 20215 Acetobacter ascendens 20215 Acetobacter pasteurianus subsp. paradoxus 20215 Mycoderma pasteurianum
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter ascendens
full scientific name: Acetobacter ascendens (Henneberg 1898) Kim et al. 2020
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125439 | negative | 92.6 |
| 125438 | negative | 95.333 |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 93.6
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 97.1 |
| 125438 | no | 91.049 |
observation
- @ref: 67770
- observation: quinones: Q-9
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_214.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_163;98_182;99_214&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: GU205099
- Sequence Identity:
- Total samples: 12367
- soil counts: 1742
- aquatic counts: 1945
- animal counts: 7743
- plant counts: 937
Sequence information
16S sequences
- @ref: 67770
- description: Acetobacter pasteurianus subsp. ascendens strain LMG 1590 16S ribosomal RNA gene, partial sequence
- accession: GU205099
- length: 1480
- database: nuccore
- NCBI tax ID: 481146
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetobacter ascendens LMG 1590 | GCA_001766235 | complete | ncbi | 481146 |
| 66792 | Acetobacter pasteurianus subsp. ascendens strain LMG 1590 | 481146.6 | plasmid | patric | 481146 |
| 66792 | Acetobacter pasteurianus subsp. ascendens strain LMG 1590 | 481146.3 | complete | patric | 481146 |
| 66792 | Acetobacter pasteurianus subsp. ascendens strain LMG 1590 | 481146.7 | plasmid | patric | 481146 |
| 66792 | Acetobacter pasteurianus subsp. ascendens strain LMG 1590 | 481146.8 | plasmid | patric | 481146 |
| 66792 | Acetobacter ascendens ascendens LMG 1590 | 2663762691 | draft | img | 481146 |
GC content
- @ref: 67770
- GC-content: 52.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 95.333 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 90.156 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 77.878 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.049 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98.391 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 77.613 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 97.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 74.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 92.6 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 93.6 |
External links
@ref: 67770
culture collection no.: JCM 25076, LMG 1590
straininfo link
- @ref: 114018
- straininfo: 14582
literature
- topic: Phylogeny
- Pubmed-ID: 29655875
- title: Acetobacter oryzifermentans sp. nov., isolated from Korean traditional vinegar and reclassification of the type strains of Acetobacter pasteurianus subsp. ascendens (Henneberg 1898) and Acetobacter pasteurianus subsp. paradoxus (Frateur 1950) as Acetobacter ascendens sp. nov., comb. nov.
- authors: Kim KH, Cho GY, Chun BH, Weckx S, Moon JY, Yeo SH, Jeon CO
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2018.03.003
- year: 2018
- mesh: *Acetic Acid, Acetobacter/*classification/*genetics/isolation & purification, Bacterial Typing Techniques/*methods, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 114018 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID14582.1 |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |