Strain identifier

BacDive ID: 16326

Type strain: Yes

Species: Streptomyces angustmyceticus

Strain history: CIP <- 2000, IFO <- IAM 9-8 <- H. Sakai, FAT

NCBI tax ID(s): 285578 (species)

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General

@ref: 10466

BacDive-ID: 16326

DSM-Number: 41683

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces angustmyceticus DSM 41683 is an obligate aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 285578
  • Matching level: species

strain history

@refhistory
10466<- ATCC <- Takeda Chem. Ind. Ltd. <- IFO <- IAM <- H. Sakai
67770KCC S-0053 <-- H. Yonehara 6A-704.
116388CIP <- 2000, IFO <- IAM 9-8 <- H. Sakai, FAT

doi: 10.13145/bacdive16326.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces angustmyceticus
  • full scientific name: Streptomyces angustmyceticus (Yüntsen et al. 1956) Kumar and Goodfellow 2010

  • synonyms

    • @ref: 20215
    • synonym: Streptomyces hygroscopicus subsp. angustmyceticus

@ref: 10466

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces angustmyceticus

full scientific name: Streptomyces angustmyceticus (Yüntsen et al. 1956) Kumar and Goodfellow 2010

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no95.269
69480100positive
116388nopositivefilament-shaped

colony morphology

@refcolony colorincubation periodmedium used
18709Corn yellow (1006)10-14 daysISP 2
18709Ochre yellow (1024)10-14 daysISP 3
18709Olive grey (7002)10-14 daysISP 4
18709Ivory (1014)10-14 daysISP 5
18709Sand yellow (1002)10-14 daysISP 6
18709Beige (1001)10-14 daysISP 7
116388

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
18709yesAerial MyceliumSilk grey (7044)ISP 2
18709yesAerial MyceliumSilk grey (7044)ISP 3
18709yesAerial MyceliumWindow grey (7040)ISP 4
18709yesAerial MyceliumLight greyISP 5
18709noISP 6
18709yesAerial MyceliumSignal white (9003)ISP 7

multimedia

  • @ref: 10466
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_41683.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10466GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
18709ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
18709ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
18709ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
18709ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
18709ISP 6yesName: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
18709ISP 7yesName: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
37736MEDIUM 128 - for Nocardia brevicatena, Nocardia flavorosea subsp. fusca and Streptomyces ambofaciensyesDistilled water make up to (1000.000 ml);Maltose (10.000 g);Agar (20.000g);Yeast extract (1.000 g);Beef extract (1.000 g);Casamino acids (2.000 g)
10466ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
10466STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
116388CIP Medium 129yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=129

culture temp

@refgrowthtypetemperaturerange
10466positivegrowth28mesophilic
18709positiveoptimum28mesophilic
29391positivegrowth10-37
37736positivegrowth30mesophilic
67770positivegrowth28mesophilic
116388positivegrowth25-37mesophilic
116388nogrowth10psychrophilic
116388nogrowth41thermophilic
116388nogrowth45thermophilic

culture pH

  • @ref: 29391
  • ability: positive
  • type: growth
  • pH: 09-10
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 116388
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
29391yes
69481yes100
69480yes99.999

compound production

@refcompound
10466angustmycin
104663' phosphoadenosine
104665' phosphosulfate
10466adenosine- 5'-phosphosulfate

halophily

@refsaltgrowthtested relationconcentration
116388NaClpositivegrowth0-6 %
116388NaClnogrowth8 %
116388NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2939118403L-arabitol+carbon source
2939117057cellobiose+carbon source
2939123652dextrin+carbon source
2939128757fructose+carbon source
2939128260galactose+carbon source
2939129987glutamate+carbon source
2939128087glycogen+carbon source
2939125017leucine+carbon source
2939126271proline+carbon source
2939116634raffinose+carbon source
2939130911sorbitol+carbon source
1163884853esculin-hydrolysis
116388606565hippurate-hydrolysis
11638817632nitrate-reduction
11638816301nitrite-reduction
11638817632nitrate-respiration

antibiotic resistance

  • @ref: 116388
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refmetaboliteproductionChebi-ID
67770angustmycinyes
116388indoleno35581

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11638815688acetoin-
11638817234glucose-

enzymes

@refvalueactivityec
116388oxidase-
116388beta-galactosidase+3.2.1.23
116388alcohol dehydrogenase-1.1.1.1
116388gelatinase+/-
116388amylase+
116388DNase-
116388caseinase+3.4.21.50
116388catalase+1.11.1.6
116388tween esterase+
116388gamma-glutamyltransferase+2.3.2.2
116388lecithinase+
116388lipase+
116388lysine decarboxylase-4.1.1.18
116388ornithine decarboxylase-4.1.1.17
116388phenylalanine ammonia-lyase-4.3.1.24
116388tryptophan deaminase-
116388urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase+3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18709++++++++++++--+-+-+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116388+-+++-+++++--------+--+---+-+--++++++----+-------++--+-----++-----------++-+---++---+---+++++++--++

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
104661Risk group (German classification)
1163881Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces angustmyceticus gene for 16S rRNA, partial sequence, strain: NBRC 3934AB1848171477ena285578
20218Streptomyces angustmyceticus strain NRRL B-2347 16S ribosomal RNA gene, partial sequenceDQ4425091489ena285578
10466Streptomyces angustmyceticus strain NRRL B-2347 16S ribosomal RNA gene, partial sequenceEU1701191449ena285578

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces angustmyceticus NBRC 3934GCA_009176265scaffoldncbi285578
66792Streptomyces angustmyceticus JCM 4053GCA_019933235completencbi285578
66792Streptomyces angustmyceticus strain JCM 4053285578.6completepatric285578
66792Streptomyces angustmyceticus strain NBRC 3934285578.5wgspatric285578
67770Streptomyces angustmyceticus NRRL B-2347GCA_002154415scaffoldncbi285578
66792Streptomyces angustmyceticus strain JCM 4053285578.9completepatric285578
66792Streptomyces angustmyceticus strain JCM 4053285578.8completepatric285578
66792Streptomyces angustmyceticus strain JCM 4053285578.7completepatric285578

GC content

  • @ref: 10466
  • GC-content: 70.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno98.183no
gram-positiveyes89.613no
anaerobicno99.262no
aerobicyes93.897no
halophileno89.707no
spore-formingyes96.306yes
motileno94.067no
thermophileno97.21yes
glucose-utilyes91.415no
glucose-fermentno91.381no

External links

@ref: 10466

culture collection no.: DSM 41683, ATCC 15484, IAM 6A-704, IFO 3934, JCM 4053, KCC S-0053, NBRC 3934, NRRL B-2347, CGMCC 4.1918, CIP 106838, KCTC 1089, NRRL B-3306, VTT E-072759

straininfo link

  • @ref: 85382
  • straininfo: 36389

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19656929Reclassification of Streptomyces hygroscopicus strains as Streptomyces aldersoniae sp. nov., Streptomyces angustmyceticus sp. nov., comb. nov., Streptomyces ascomycinicus sp. nov., Streptomyces decoyicus sp. nov., comb. nov., Streptomyces milbemycinicus sp. nov. and Streptomyces wellingtoniae sp. nov.Kumar Y, Goodfellow MInt J Syst Evol Microbiol10.1099/ijs.0.012161-02009Bacterial Typing Techniques, DNA, Bacterial/analysis/genetics, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Soil Microbiology, Species Specificity, Streptomyces/*classification/genetics/metabolism/physiologyGenetics
Phylogeny32155704Streptomyces lydicamycinicus sp. nov. and Its Secondary Metabolite Biosynthetic Gene Clusters for Polyketide and Nonribosomal Peptide Compounds.Komaki H, Hosoyama A, Igarashi Y, Tamura TMicroorganisms10.3390/microorganisms80303702020

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
10466Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 41683)https://www.dsmz.de/collection/catalogue/details/culture/DSM-41683
18709Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM41683.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
29391Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604125798
37736Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/19013
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
85382Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36389.1StrainInfo: A central database for resolving microbial strain identifiers
116388Curators of the CIPCollection of Institut Pasteur (CIP 106838)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106838