General

@ref: 67770

BacDive-ID: 163256

keywords: 16S sequence, Bacteria, mesophilic

description: Leifsonia lichenia JCM 23226 is a mesophilic bacterium that was isolated from Lichen at the Botanical Garden of the Univ. of Tokyo.

NCBI tax id

• NCBI tax id: 407964
• Matching level: species

strain history

• @ref: 67770
• history: IAM 15426 <-- S.-Y. An and A. Yokota 2Sb.

doi: 10.13145/bacdive163256.20241212.9.2

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/actinomycetota
• domain: Bacteria
• phylum: Actinomycetota
• class: Actinomycetes
• order: Micrococcales
• family: Microbacteriaceae
• genus: Leifsonia
• species: Leifsonia lichenia
• full scientific name: Leifsonia lichenia An et al. 2010

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Microbacteriaceae

genus: Leifsonia

species: Leifsonia lichenia

full scientific name: Leifsonia lichenia An et al. 2010

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 28

Physiology and metabolism

observation

• @ref: 67770
• observation: quinones: MK-11, MK-10

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Lichen at the Botanical Garden of the Univ. of Tokyo
• geographic location: Bunkyo-ku, Tokyo
• country: Japan
• origin.country: JPN
• continent: Asia

taxonmaps

• @ref: 69479
• File name: preview.99_1148.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_671;97_777;98_901;99_1148&stattab=map
• Last taxonomy: Leifsonia
• 16S sequence: AB278552
• Sequence Identity:
• Total samples: 3840
• soil counts: 2218
• aquatic counts: 554
• animal counts: 672
• plant counts: 396

Sequence information

16S sequences

• @ref: 67770
• description: Leifsonia lichenia gene for 16S rRNA, partial sequence, strain: 2Sb
• accession: AB278552
• length: 1465
• database: nuccore
• NCBI tax ID: 407964

GC content

• @ref: 67770
• GC-content: 61.7
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 23226, IAM 15426, KCTC 13122

literature

• topic: Phylogeny
• Pubmed-ID: 19940379
• title: Leifsonia lichenia sp. nov., isolated from lichen in Japan.
• authors: An SY, Xiao T, Yokota A
• journal: J Gen Appl Microbiol
• DOI: 10.2323/jgam.55.339
• year: 2009
• mesh: Actinomycetales/classification/genetics/*isolation & purification, *Aerobiosis, Aminobutyrates/pharmacology, *Bacterial Typing Techniques, Base Composition/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/analysis, Genes, rRNA/genetics, *Geologic Sediments, Japan, Lichens/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/*analysis, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity
• topic2: Genetics

Reference