Strain identifier
BacDive ID: 163041
Type strain: 
Species: Ensifer fredii
Strain history: IAM 13627 <-- USDA 191.
NCBI tax ID(s): 380 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 163041
keywords: 16S sequence, Bacteria, mesophilic
description: Ensifer fredii JCM 20969 is a mesophilic bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 380
- Matching level: species
strain history
- @ref: 67770
- history: IAM 13627 <-- USDA 191.
doi: 10.13145/bacdive163041.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Rhizobiaceae
- genus: Ensifer
- species: Ensifer fredii
- full scientific name: Ensifer fredii (Scholla and Elkan 1984) Young 2003
synonyms
@ref synonym 20215 Sinorhizobium xinjiangensis 20215 Rhizobium fredii 20215 Sinorhizobium fredii 20215 Ensifer xinjiangensis 20215 Sinorhizobium xinjiangense
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Rhizobiaceae
genus: Ensifer
species: Ensifer fredii
full scientific name: Ensifer fredii (Scholla and Elkan 1984) Young 2003
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil
- geographic location: Shanghai
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 124043 | Sinorhizobium fredii partial 16S rRNA gene, strain LMG 6216 | AM181749 | 1426 | nuccore | 380 |
| 124043 | Sinorhizobium fredii strain LMG 8317, 16S rRNA gene | X77123 | 1437 | nuccore | 380 |
External links
@ref: 67770
culture collection no.: JCM 20969, IAM 13627, LMG 6216, LMG 8317, USDA 191
straininfo link
- @ref: 113809
- straininfo: 4759
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 2351951 | Nodule formation in soybeans by exopolysaccharide mutants of Rhizobium fredii USDA 191. | Ko YH, Gayda R | J Gen Microbiol | 10.1099/00221287-136-1-105 | 1990 | Microscopy, Electron, Scanning, Mutation, Polysaccharides, Bacterial/biosynthesis/*physiology, Rhizobium/isolation & purification/metabolism/*physiology, Soybeans/*microbiology/ultrastructure, Symbiosis/*physiology | Phylogeny |
| Enzymology | 2491321 | Expression of Bradyrhizobium japonicum nodulation gene in Rhizobium fredii nod mutants. | Zhou LM, Huang TW, Gong HY, Ning LF, Cen YH | Chin J Biotechnol | 1989 | Blotting, Southern, Cloning, Molecular, Conjugation, Genetic, Escherichia coli/genetics, Gene Expression, Genes, Bacterial, *Mutation, Nitrogen Fixation/*genetics, Plasmids, Restriction Mapping, Rhizobiaceae/*genetics, Rhizobium/*genetics | ||
| Enzymology | 3015025 | Mobilization of Tn5 insertions from Rhizobium fredii by pJB3JI. | Thomas PM, Kuykendall LD, Angle JS | Appl Environ Microbiol | 10.1128/aem.52.1.206-208.1986 | 1986 | *Cloning, Molecular, *DNA Transposable Elements, DNA, Recombinant, Escherichia coli/genetics, *Genes, Bacterial, Mutation, *R Factors, Rhizobium/*genetics | |
| Metabolism | 8755622 | Proteins from cells of Rhizobium fredii bind to DNA sequences precedingnolX, a flavonoid-inducible nod gene that is not associated with a nod box. | Bellato CM, Balatti PA, Pueppke SG, Krishnan HB | Mol Plant Microbe Interact | 10.1094/mpmi-9-0457 | 1996 | Bacterial Proteins/*genetics/*metabolism, Base Sequence, Cell-Free System, DNA-Binding Proteins/*metabolism, Flavonoids/metabolism, Gene Expression Regulation, Bacterial, Molecular Sequence Data, Oligodeoxyribonucleotides, Rhizobium/*metabolism, Sequence Deletion, Sequence Homology, Nucleic Acid, Soybeans/microbiology | Genetics |
| Metabolism | 8814304 | Rhizobium fredii synthesizes an array of lipooligosaccharides, including a novel compound with glucose inserted into the backbone of the molecule. | Bec-Ferte MP, Krishnan HB, Savagnac A, Pueppke SG, Prome JC | FEBS Lett | 10.1016/0014-5793(96)00903-9 | 1996 | Acetylglucosamine/analysis/metabolism, Antigens, Bacterial, Carbohydrate Conformation, Carbohydrate Sequence, Chitin, Chromatography, High Pressure Liquid, Flavonoids/metabolism, Glucose/analysis/metabolism, Lipopolysaccharides/*biosynthesis/chemistry, Models, Structural, Molecular Sequence Data, Oleic Acids/metabolism, Plants/microbiology, Rhizobium/*metabolism, Spectrometry, Mass, Secondary Ion, Symbiosis | Genetics |
| Phylogeny | 8832091 | Characterization of the biosynthesis of beta(1-2) cyclic glucan in R. Fredii. Beta(1-2) glucan has no apparent role in nodule invasion of Mc Call and Peking soybean cultivars. | Inon de Iannino N, Briones G, Kreiman G, Ugalde R | Cell Mol Biol (Noisy-le-grand) | 1996 | Bacterial Proteins/chemistry/isolation & purification, Glucans/*biosynthesis/chemistry, Glycopeptides/chemistry/isolation & purification, Kinetics, Membrane Proteins/chemistry/isolation & purification, Microscopy, Electron, Molecular Structure, Molecular Weight, Rhizobium/isolation & purification/*metabolism/ultrastructure, Soybeans/classification/*microbiology/ultrastructure, Species Specificity, Symbiosis, Uridine Diphosphate Glucose/metabolism, *beta-Glucans | Enzymology | |
| Metabolism | 9141674 | Periplasmic cyclic 1,2-beta-glucan in Brucella spp. is not osmoregulated. | Briones G, de Lannino NI, Steinberg M, Ugalde RA | Microbiology (Reading) | 10.1099/00221287-143-4-1115 | 1997 | Brucella/*metabolism, Brucella abortus/metabolism, Cell Compartmentation, Cell Membrane/*metabolism, Cell Membrane Permeability, Glucans/*biosynthesis, Polysaccharides, Bacterial/*biosynthesis, Species Specificity, Uridine Diphosphate Glucose/metabolism, *Water-Electrolyte Balance, *beta-Glucans | Phylogeny |
| Enzymology | 9141700 | The soybean cultivar specificity gene nolX is present, expressed in a nodD-dependent manner, and of symbiotic significance in cultivar-nonspecific strains of Rhizobium (Sinorhizobium) fredii. | Bellato C, Krishnan HB, Cubo T, Temprano F, Pueppke SG | Microbiology (Reading) | 10.1099/00221287-143-4-1381 | 1997 | Bacterial Proteins/*genetics/*metabolism, Cloning, Molecular, Fabaceae/microbiology, Gene Expression, *Genes, Bacterial, Molecular Sequence Data, Mutagenesis, Insertional, Phenotype, Plants, Medicinal, Restriction Mapping, Rhizobium/*genetics, Soybeans/*microbiology, Species Specificity, *Symbiosis | Genetics |
| 9625713 | Release of flavonoids by the soybean cultivars McCall and peking and their perception as signals by the nitrogen-fixing symbiont sinorhizobium fredii | Pueppke SG, Bolanos-Vasquez MC, Werner D, Bec-Ferte MP, Prome JC, Krishnan HB | Plant Physiol | 10.1104/pp.117.2.599 | 1998 | |||
| Enzymology | 10432638 | Expression of a Serratia marcescens chitinase gene in Sinorhizobium fredii USDA191 and Sinorhizobium meliloti RCR2011 impedes soybean and alfalfa nodulation. | Krishnan HB, Kim KY, Krishnan AH | Mol Plant Microbe Interact | 10.1094/MPMI.1999.12.8.748 | 1999 | Chitinases/*genetics, Fabaceae/*microbiology, Gene Expression, *Genes, Bacterial, Medicago sativa/microbiology, Plant Diseases/genetics, *Plants, Medicinal, Rhizobium/enzymology/genetics, Serratia marcescens/*enzymology/*genetics, Sinorhizobium meliloti/enzymology/genetics, Soybeans/microbiology, Symbiosis | |
| Genetics | 10975657 | Sinorhizobium fredii USDA257, a cultivar-specific soybean symbiont, carries two copies of y4yA and y4yB, two open reading frames that are located in a region that encodes the type III protein secretion system. | Jiang G, Krishnan HB | Mol Plant Microbe Interact | 10.1094/MPMI.2000.13.9.1010 | 2000 | Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics, *Genes, Bacterial, Molecular Sequence Data, Open Reading Frames, Sequence Homology, Amino Acid, Sinorhizobium/*genetics, Soybeans/*microbiology, *Symbiosis | |
| Enzymology | 11274120 | A functional myo-inositol dehydrogenase gene is required for efficient nitrogen fixation and competitiveness of Sinorhizobium fredii USDA191 to nodulate soybean (Glycine max [L.] Merr.). | Jiang G, Krishnan AH, Kim YW, Wacek TJ, Krishnan HB | J Bacteriol | 10.1128/JB.183.8.2595-2604.2001 | 2001 | Amino Acid Sequence, Base Sequence, Cloning, Molecular, Gene Expression Regulation, Bacterial, Genes, Bacterial, Inositol/metabolism, Molecular Sequence Data, Mutation, *Nitrogen Fixation, Sequence Analysis, DNA, Sinorhizobium/*enzymology/genetics/*physiology, Soybeans/*microbiology/ultrastructure, Sugar Alcohol Dehydrogenases/chemistry/*genetics/metabolism | Metabolism |
| Phylogeny | 12549015 | [A sinorhizobium fredll strain that effectively nodulate Medicago sativa]. | Zhang H, Zhang H, Li X, Yang S | Wei Sheng Wu Xue Bao | 2001 | Base Sequence, DNA, Bacterial/genetics, Medicago sativa/*microbiology, Nitrogen Fixation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sinorhizobium fredii/genetics/*growth & development/isolation & purification, Soybeans/microbiology, *Symbiosis | Transcriptome | |
| Metabolism | 14506861 | nodD alleles of Sinorhizobium fredii USDA191 differentially influence soybean nodulation, nodC expression, and production of exopolysaccharides. | Machado D, Krishnan HB | Curr Microbiol | 10.1007/s00284-002-3972-6 | 2003 | *Alleles, Bacterial Proteins/genetics/*metabolism, *Gene Expression Regulation, Bacterial, N-Acetylglucosaminyltransferases/genetics/metabolism, Nitrogen Fixation, Polysaccharides, Bacterial/metabolism, Sinorhizobium/genetics/*growth & development/*metabolism, Soybeans/*microbiology, Symbiosis, Transcriptional Activation | Biotechnology |
| 14689165 | The effect of FITA mutations on the symbiotic properties of Sinorhizobium fredii varies in a chromosomal-background-dependent manner. | Vinardell JM, Lopez-Baena FJ, Hidalgo A, Ollero FJ, Bellogin R, del Rosario Espuny M, Temprano F, Romero F, Krishnan HB, Pueppke SG, Ruiz-Sainz JE | Arch Microbiol | 10.1007/s00203-003-0635-3 | 2003 | Bacterial Proteins/*genetics/*physiology, Conjugation, Genetic, DNA-Binding Proteins/*genetics/*physiology, Gene Expression Regulation, Bacterial, Genes, Bacterial, Mutation, Nitrogen Fixation, Plasmids, Sinorhizobium fredii/*genetics/growth & development/*physiology, Soybeans/growth & development/microbiology, *Symbiosis, Trans-Activators/*genetics/*physiology, *Transcriptional Activation | ||
| Pathogenicity | 16347066 | Symbiotic Effectiveness and Host-Strain Interactions of Rhizobium fredii USDA 191 on Different Soybean Cultivars. | Israel DW, Mathis JN, Barbour WM, Elkan GH | Appl Environ Microbiol | 10.1128/aem.51.5.898-903.1986 | 1986 | ||
| 16665616 | Regulation of nodulation in the soybean-Rhizobium symbiosis : strain and cultivar variability. | Heron DS, Pueppke SG | Plant Physiol | 10.1104/pp.84.4.1391 | 1987 | |||
| Metabolism | 16776297 | Y4xP, an open reading frame located in a type III protein secretion system locus of Sinorhizobium fredii USDA257 and USDA191, encodes cysteine synthase. | Lorio JC, Chronis D, Krishnan HB | Mol Plant Microbe Interact | 10.1094/MPMI-19-0635 | 2006 | Amino Acid Sequence, Bacterial Proteins/*genetics/metabolism, Cysteine Synthase/*genetics/metabolism, Escherichia coli/genetics, Gene Dosage, Gene Expression Regulation, Bacterial, Genetic Complementation Test, Genistein/pharmacology, Molecular Sequence Data, Mutation, *Open Reading Frames, Recombinant Fusion Proteins/analysis, Sequence Alignment, Sinorhizobium fredii/enzymology/*genetics/pathogenicity, Soybeans/microbiology, Symbiosis/genetics | Genetics |
| Enzymology | 17151471 | Identification of a functional 2-keto-myo-inositol dehydratase gene of Sinorhizobium fredii USDA191 required for myo-inositol utilization. | Yoshida K, Kim WS, Kinehara M, Mukai R, Ashida H, Ikeda H, Fujita Y, Krishnan HB | Biosci Biotechnol Biochem | 10.1271/bbb.60362 | 2006 | Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA Primers, *Genes, Bacterial, Hydro-Lyases/chemistry/*genetics/metabolism, Inositol/*metabolism, Molecular Sequence Data, Sequence Homology, Amino Acid, Sinorhizobium fredii/*enzymology/genetics | Metabolism |
| Biotechnology | 19270906 | Infection by Heterodera glycines Elevates Isoflavonoid Production and Influences Soybean Nodulation. | Kennedy MJ, Niblack TL, Krishnan HB | J Nematol | 1999 | |||
| Enzymology | 21764962 | Distinct cell surface appendages produced by Sinorhizobium fredii USDA257 and S. fredii USDA191, cultivar-specific and nonspecific symbionts of soybean. | Krishnan HB, Natarajan SS, Kim WS | Appl Environ Microbiol | 10.1128/AEM.05366-11 | 2011 | Bacterial Outer Membrane Proteins/*analysis, Chromatography, Liquid, Electrophoresis, Gel, Two-Dimensional, Electrophoresis, Polyacrylamide Gel, Fimbriae, Bacterial/*ultrastructure, Flagella/*ultrastructure, Microscopy, Electron, Transmission, Sinorhizobium fredii/*chemistry/metabolism/*ultrastructure, Soybeans/*microbiology, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Tandem Mass Spectrometry | Proteome |
| 24202008 | Interaction of Rhizobium fredii USDA257 and nodulation mutants derived from it with the agronomically improved soybean cultivar McCall. | Chatterjee A, Balatti PA, Gibbons W, Pueppke SG | Planta | 10.1007/BF00198781 | 1990 | |||
| 24307153 | The formation of R-prime deletion mutants and the identification of the symbiotic genes in Rhizobium fredii strain USDA191. | Engwall KS, Atherly AG | Plant Mol Biol | 10.1007/BF00021305 | 1986 | |||
| 27393582 | Correlation between NaCl Sensitivity of Rhizobium Bacteria and Ineffective Nodulation of Leguminous Plants. | Ohwada T, Sasaki Y, Koike H, Igawa K, Sato T | Biosci Biotechnol Biochem | 10.1271/bbb.62.2086 | 1998 | |||
| Metabolism | 30832430 | Classical Soybean (Glycine max (L.) Merr) Symbionts, Sinorhizobium fredii USDA191 and Bradyrhizobium diazoefficiens USDA110, Reveal Contrasting Symbiotic Phenotype on Pigeon Pea (Cajanus cajan (L.) Millsp). | Alaswad AA, Oehrle NW, Krishnan HB | Int J Mol Sci | 10.3390/ijms20051091 | 2019 | Bradyrhizobium/genetics/metabolism/*pathogenicity, Cajanus/metabolism/*microbiology, Host Specificity, Nitrogen Fixation, *Phenotype, Root Nodules, Plant/metabolism/microbiology/ultrastructure, Sinorhizobium fredii/genetics/metabolism/*pathogenicity, Soybeans/microbiology, *Symbiosis, Type III Secretion Systems/genetics | Phenotype |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 113809 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID4759.1 |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |