Strain identifier
BacDive ID: 163003
Type strain:
Species: Arthrobacter sp.
Strain history: IAM 13128 <-- ATCC 13330 <-- M. P. Starr TP2.
NCBI tax ID(s): 1667 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 163003
keywords: Bacteria, mesophilic, Gram-positive
description: Arthrobacter sp. JCM 20844 is a mesophilic, Gram-positive bacterium that was isolated from Stem gall on Douglas fir .
NCBI tax id
- NCBI tax id: 1667
- Matching level: species
strain history
- @ref: 67770
- history: IAM 13128 <-- ATCC 13330 <-- M. P. Starr TP2.
doi: 10.13145/bacdive163003.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter sp.
- full scientific name: Arthrobacter Conn and Dimmick 1947 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter sp.
full scientific name: Arthrobacter sp.
type strain: no
Morphology
cell morphology
@ref | gram stain | confidence | motility |
---|---|---|---|
69480 | positive | 100 | |
69480 | 95.17 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.99 |
69481 | no | 100 |
observation
- @ref: 67770
- observation: quinones: MK-9(H2)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Stem gall on Douglas fir (Pseudotsuga menziesii)
- host species: Pseudotsuga menziesii
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 94.024 | no |
flagellated | no | 96.067 | no |
gram-positive | yes | 93.558 | no |
anaerobic | no | 93.804 | no |
aerobic | no | 96.471 | no |
halophile | yes | 75.558 | no |
spore-forming | no | 92.761 | no |
glucose-util | yes | 86.362 | no |
thermophile | no | 98.716 | yes |
glucose-ferment | yes | 85.643 | no |
External links
@ref: 67770
culture collection no.: JCM 20844, ATCC 13330, IAM 13128, LMG 137
straininfo link
- @ref: 113772
- straininfo: 6555
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
113772 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID6555.1 |