Strain identifier

BacDive ID: 162953

Type strain: No

Species: Sporolactobacillus nakayamae subsp. nakayamae

Strain history: IAM 12387 <-- O. Nakayama M-103 ("Sporolactobacillus laevus var. intermedius").

NCBI tax ID(s): 269671 (subspecies)

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General

@ref: 67770

BacDive-ID: 162953

keywords: 16S sequence, Bacteria, mesophilic

description: Sporolactobacillus nakayamae subsp. nakayamae JCM 20537 is a mesophilic bacterium that was isolated from Soil.

NCBI tax id

  • NCBI tax id: 269671
  • Matching level: subspecies

strain history

  • @ref: 67770
  • history: IAM 12387 <-- O. Nakayama M-103 ("Sporolactobacillus laevus var. intermedius").

doi: 10.13145/bacdive162953.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Sporolactobacillaceae
  • genus: Sporolactobacillus
  • species: Sporolactobacillus nakayamae subsp. nakayamae
  • full scientific name: Sporolactobacillus nakayamae subsp. nakayamae Yanagida et al. 1997

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Sporolactobacillaceae

genus: Sporolactobacillus

species: Sporolactobacillus nakayamae subsp. nakayamae

full scientific name: Sporolactobacillus nakayamae subsp. nakayamae Yanagida et al. 1997

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Soil
  • geographic location: Kawasaki, Kanagawa Pref.
  • country: Japan
  • origin.country: JPN
  • continent: Asia

taxonmaps

  • @ref: 69479
  • File name: preview.99_15040.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_414;96_3495;97_4284;98_5485;99_15040&stattab=map
  • Last taxonomy: Sporolactobacillus
  • 16S sequence: D16285
  • Sequence Identity:
  • Total samples: 1165
  • soil counts: 523
  • aquatic counts: 203
  • animal counts: 235
  • plant counts: 204

Sequence information

16S sequences

  • @ref: 67770
  • description: Sporolactobacillus laevis gene for 16S rRNA, partial sequence, strain: IAM 12387
  • accession: D16285
  • length: 1483
  • database: nuccore
  • NCBI tax ID: 2080

External links

@ref: 67770

culture collection no.: JCM 20537, IAM 12387

straininfo link

  • @ref: 113731
  • straininfo: 64020

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113731Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID64020.1