Strain identifier
BacDive ID: 162944
Type strain: 
Species: Xanthomonas campestris
Strain history: IAM 12310 <-- R. J. Roberts; Cold Sprig Habor Lab., USA <-- ATCC 23390 ("Xanthomonas nigromaculans") <-- M. P. Starr <-- D. Dye; 2T2 <-- N. Okabe.
NCBI tax ID(s): 339 (species)
General
@ref: 67770
BacDive-ID: 162944
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Xanthomonas campestris JCM 20469 is a mesophilic, Gram-negative bacterium of the family Lysobacteraceae.
NCBI tax id
- NCBI tax id: 339
- Matching level: species
strain history
- @ref: 67770
- history: IAM 12310 <-- R. J. Roberts; Cold Sprig Habor Lab., USA <-- ATCC 23390 ("Xanthomonas nigromaculans") <-- M. P. Starr <-- D. Dye; 2T2 <-- N. Okabe.
doi: 10.13145/bacdive162944.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Xanthomonas
- species: Xanthomonas campestris
- full scientific name: Xanthomonas campestris (Pammel 1895) Dowson 1939 (Approved Lists 1980)
synonyms
@ref synonym 20215 Phytomonas campestris 20215 Bacillus campestris
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Lysobacterales
family: Lysobacteraceae
genus: Xanthomonas
species: Xanthomonas campestris
full scientific name: Xanthomonas campestris (Pammel 1895) Dowson 1939
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 99.995 | |
| 69480 | 97.905 | yes |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.999 |
| 69481 | no | 98 |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Xanthomonas campestris pv. nigromaculans NCPPB 1935 | GCA_020783725 | contig | ncbi | 487879 |
| 66792 | Xanthomonas campestris pv. nigromaculans NCPPB 1935 | GCA_938743425 | complete | ncbi | 487879 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 98 | no |
| aerobic | yes | 95.044 | no |
| flagellated | no | 84.795 | no |
| gram-positive | no | 97.862 | no |
| anaerobic | no | 99.236 | no |
| halophile | no | 93.822 | no |
| spore-forming | no | 95.119 | no |
| thermophile | no | 99.478 | yes |
| glucose-util | yes | 92.73 | no |
| motile | yes | 81.226 | no |
| glucose-ferment | no | 90.211 | no |
External links
@ref: 67770
culture collection no.: JCM 20469, ATCC 23390, IAM 12310, ICMP 309, ICMP 80, ICPB XN103, LMG 787, NCPPB 1935
straininfo link
- @ref: 113723
- straininfo: 5724
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 113723 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID5724.1 |