Strain identifier
BacDive ID: 162906
Type strain: 
Species: Acetobacter pasteurianus
Strain history: IAM 12073 <-- ATCC 9322 <-- NCTC 7113 <-- J. T. Walker.
NCBI tax ID(s): 438 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 162906
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Acetobacter pasteurianus JCM 20384 is a mesophilic, Gram-negative bacterium that was isolated from Sour beer.
NCBI tax id
- NCBI tax id: 438
- Matching level: species
strain history
- @ref: 67770
- history: IAM 12073 <-- ATCC 9322 <-- NCTC 7113 <-- J. T. Walker.
doi: 10.13145/bacdive162906.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter pasteurianus
- full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916 (Approved Lists 1980)
synonyms
@ref synonym 20215 Acetobacter peroxydans 20215 Acetobacter paradoxus 20215 Acetobacter paradoxum 20215 Acetobacter pasteurianus subsp. ascendens 20215 Bacterium ascendens 20215 Acetobacter ascendens 20215 Acetobacter pasteurianus subsp. paradoxus 20215 Mycoderma pasteurianum
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter pasteurianus
full scientific name: Acetobacter pasteurianus (Hansen 1879) Beijerinck and Folpmers 1916
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 95.333 |
| 125439 | negative | 91.7 |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 92.4
spore formation
- @ref: 125439
- spore formation: no
- confidence: 93.5
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sour beer
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetobacter malorum strain LMG 1604 | 178901.15 | wgs | patric | 178901 |
| 66792 | Acetobacter malorum LMG 1604 | 2728368911 | draft | img | 178901 |
| 67770 | Acetobacter malorum LMG 1604 | GCA_001581085 | contig | ncbi | 178901 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 95.333 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 83.497 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.207 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 76.307 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.316 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 62.268 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 93.5 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 63.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 91.7 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 92.4 |
External links
@ref: 67770
culture collection no.: JCM 20384, ATCC 9322, IAM 12073, LMG 1604, NCIMB 7113, NCTC 7113
straininfo link
- @ref: 113693
- straininfo: 14585
literature
- topic: Metabolism
- Pubmed-ID: 17453192
- title: Microbial asymmetric oxidation of 2-butyl-1,3-propanediol.
- authors: Mitsukura K, Uno T, Yoshida T, Nagasawa T
- journal: Appl Microbiol Biotechnol
- DOI: 10.1007/s00253-007-0974-0
- year: 2007
- mesh: Acetobacter/*metabolism, Biotransformation, Oxidation-Reduction, Propylene Glycol/*metabolism, Pseudomonas putida/*metabolism
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 113693 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID14585.1 |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |