Strain identifier

BacDive ID: 162866

Type strain: No

Species: Lactobacillus sp.

Strain history: IAM 10068 <-- K. Kitahara.

NCBI tax ID(s): 1591 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 162866

keywords: genome sequence, Bacteria, mesophilic, Gram-positive

description: Lactobacillus sp. JCM 20310 is a mesophilic, Gram-positive bacterium of the family Lactobacillaceae.

NCBI tax id

  • NCBI tax id: 1591
  • Matching level: species

strain history

  • @ref: 67770
  • history: IAM 10068 <-- K. Kitahara.

doi: 10.13145/bacdive162866.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus sp.
  • full scientific name: Lactobacillus Beijerinck 1901 (Approved Lists 1980)

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus sp.

full scientific name: Lactobacillus sp.

type strain: no

Morphology

cell morphology

@refgram stainconfidencemotility
69480positive100
6948097.437no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69480no99.997
69481no100

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus japonicus NBRC 102478GCA_007989525contigncbi29399
66792Lactobacillus japonicus strain NBRC 10247829399.3wgspatric29399

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveyes96.211no
anaerobicno85.78no
halophileyes85.848no
spore-formingno93.909no
glucose-utilyes90.463no
motileno95.178no
flagellatedno96.694no
aerobicno97.466no
thermophileno99.824yes
glucose-fermentyes88.847no

External links

@ref: 67770

culture collection no.: JCM 20310, IAM 10068, NBRC 102478

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1