Strain identifier
BacDive ID: 162866
Type strain:
Species: Lactobacillus sp.
Strain history: IAM 10068 <-- K. Kitahara.
NCBI tax ID(s): 1591 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162866
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Lactobacillus sp. JCM 20310 is a mesophilic, Gram-positive bacterium of the family Lactobacillaceae.
NCBI tax id
- NCBI tax id: 1591
- Matching level: species
strain history
- @ref: 67770
- history: IAM 10068 <-- K. Kitahara.
doi: 10.13145/bacdive162866.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactobacillus
- species: Lactobacillus sp.
- full scientific name: Lactobacillus Beijerinck 1901 (Approved Lists 1980)
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus sp.
full scientific name: Lactobacillus sp.
type strain: no
Morphology
cell morphology
@ref | gram stain | confidence | motility |
---|---|---|---|
69480 | positive | 100 | |
69480 | 97.437 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.997 |
69481 | no | 100 |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lactobacillus japonicus NBRC 102478 | GCA_007989525 | contig | ncbi | 29399 |
66792 | Lactobacillus japonicus strain NBRC 102478 | 29399.3 | wgs | patric | 29399 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | yes | 96.211 | no |
anaerobic | no | 85.78 | no |
halophile | yes | 85.848 | no |
spore-forming | no | 93.909 | no |
glucose-util | yes | 90.463 | no |
motile | no | 95.178 | no |
flagellated | no | 96.694 | no |
aerobic | no | 97.466 | no |
thermophile | no | 99.824 | yes |
glucose-ferment | yes | 88.847 | no |
External links
@ref: 67770
culture collection no.: JCM 20310, IAM 10068, NBRC 102478
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |