Strain identifier
BacDive ID: 162840
Type strain: 
Species: Gluconobacter albidus
Strain history: IAM 1806 <-- T. Asai G-5 <-- IFO 3250 <-- K. Kondo 05.
NCBI tax ID(s): 1307944 (strain), 318683 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 162840
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Gluconobacter albidus JCM 20271 is a mesophilic, Gram-negative bacterium that was isolated from Dahlia.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 318683 | species |
| 1307944 | strain |
strain history
- @ref: 67770
- history: IAM 1806 <-- T. Asai G-5 <-- IFO 3250 <-- K. Kondo 05.
doi: 10.13145/bacdive162840.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Gluconobacter
- species: Gluconobacter albidus
- full scientific name: Gluconobacter albidus (ex Kondo and Ameyama 1958) Yukphan et al. 2005
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Acetobacteraceae
genus: Gluconobacter
species: Gluconobacter albidus
full scientific name: Gluconobacter albidus Yukphan et al. 2005
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.333
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Dahlia
taxonmaps
- @ref: 69479
- File name: preview.99_530.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_336;97_374;98_430;99_530&stattab=map
- Last taxonomy: Gluconobacter
- 16S sequence: AB178392
- Sequence Identity:
- Total samples: 4981
- soil counts: 721
- aquatic counts: 546
- animal counts: 2856
- plant counts: 858
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 67770 | Gluconobacter albidus gene for 16S rRNA, partial sequence, strain:NBRC 3250 | AB178392 | 1409 | nuccore | 318683 |
| 124043 | Gluconobacter albidus genes for 16S rRNA, 16S-23S rRNA ITS, 23S rRNA, partial and complete sequence, strain:NBRC 3250. | AB162710 | 715 | nuccore | 318683 |
| 124043 | Gluconobacter albidus DNA, 16S-23S rRNA internal transcribed spacer, strain:NBRC 3250. | AB163828 | 678 | nuccore | 318683 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Gluconobacter albidus NBRC 3250 | GCA_002723915 | contig | ncbi | 318683 |
| 66792 | Gluconobacter albidus LMG 1356 | GCA_001580845 | contig | ncbi | 318683 |
| 66792 | Gluconobacter albidus strain LMG 1356 | 318683.5 | wgs | patric | 318683 |
| 66792 | Gluconobacter albidus strain NBRC 3250 | 318683.9 | patric | 318683 | |
| 66792 | Gluconobacter albidus LMG 1356 | 2724679592 | draft | img | 318683 |
GC content
- @ref: 67770
- GC-content: 60
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.333 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 86.589 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.348 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 80.43 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 95.45 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 65.495 | no |
External links
@ref: 67770
culture collection no.: JCM 20271, BCC 14434, CCM 2365, IAM 1806, IFO 3250, LMG 1355, LMG 1356, NBRC 3250
straininfo link
- @ref: 113644
- straininfo: 2897
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 113644 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID2897.1 |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |