Strain identifier

BacDive ID: 162830

Type strain: No

Species: Tetragenococcus halophilus

Strain history: IAM 1692 <-- H. Iizuka and K. Yamasato PS-27 ("Pediococcus soyae").

NCBI tax ID(s): 51669 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 162830

keywords: 16S sequence, Bacteria, mesophilic

description: Tetragenococcus halophilus JCM 20258 is a mesophilic bacterium that was isolated from Shoyu moromi .

NCBI tax id

  • NCBI tax id: 51669
  • Matching level: species

strain history

  • @ref: 67770
  • history: IAM 1692 <-- H. Iizuka and K. Yamasato PS-27 ("Pediococcus soyae").

doi: 10.13145/bacdive162830.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Enterococcaceae
  • genus: Tetragenococcus
  • species: Tetragenococcus halophilus
  • full scientific name: Tetragenococcus halophilus (Mees 1934) Collins et al. 1993
  • synonyms

    • @ref: 20215
    • synonym: Pediococcus halophilus

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Enterococcaceae

genus: Tetragenococcus

species: Tetragenococcus halophilus

full scientific name: Tetragenococcus halophilus (Mees 1934) Collins et al. 1993

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Shoyu moromi (fermented soybean mash)

taxonmaps

  • @ref: 69479
  • File name: preview.99_261.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_184;97_200;98_223;99_261&stattab=map
  • Last taxonomy: Tetragenococcus halophilus
  • 16S sequence: AB911554
  • Sequence Identity:
  • Total samples: 23236
  • soil counts: 861
  • aquatic counts: 1678
  • animal counts: 20165
  • plant counts: 532

Sequence information

16S sequences

  • @ref: 67770
  • description: Tetragenococcus halophilus gene for 16S rRNA, partial sequence, strain: JCM 20258
  • accession: AB911554
  • length: 1522
  • database: ena
  • NCBI tax ID: 51669

External links

@ref: 67770

culture collection no.: JCM 20258, IAM 1692

straininfo link

  • @ref: 113636
  • straininfo: 219127

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
113636Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID219127.1