Strain identifier
BacDive ID: 162820
Type strain:
Species: Tetragenococcus halophilus subsp. halophilus
Strain history: IAM 1673 <-- H. Iizuka and K. Yamasato PS-2 ("Pediococcus soyae").
NCBI tax ID(s): 1513897 (subspecies)
General
@ref: 67770
BacDive-ID: 162820
keywords: 16S sequence, Bacteria, mesophilic
description: Tetragenococcus halophilus subsp. halophilus JCM 20245 is a mesophilic bacterium that was isolated from Shoyu moromi.
NCBI tax id
- NCBI tax id: 1513897
- Matching level: subspecies
strain history
- @ref: 67770
- history: IAM 1673 <-- H. Iizuka and K. Yamasato PS-2 ("Pediococcus soyae").
doi: 10.13145/bacdive162820.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Enterococcaceae
- genus: Tetragenococcus
- species: Tetragenococcus halophilus subsp. halophilus
- full scientific name: Tetragenococcus halophilus subsp. halophilus (Mees 1934) Justé et al. 2012
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Enterococcaceae
genus: Tetragenococcus
species: Tetragenococcus halophilus subsp. halophilus
full scientific name: Tetragenococcus halophilus subsp. halophilus (Mees 1934) Just‚ et al. 2012
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Shoyu moromi
taxonmaps
- @ref: 69479
- File name: preview.99_261.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_184;97_200;98_223;99_261&stattab=map
- Last taxonomy: Tetragenococcus halophilus
- 16S sequence: AB911543
- Sequence Identity:
- Total samples: 23236
- soil counts: 861
- aquatic counts: 1678
- animal counts: 20165
- plant counts: 532
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
67770 | Tetragenococcus halophilus gene for 16S rRNA, partial sequence, strain: JCM 20245 | AB911543 | 1522 | ena | 51669 |
67770 | Tetragenococcus halophilus strain IAM 1673 16S ribosomal RNA gene, partial sequence | EU689054 | 1385 | ena | 51669 |
External links
@ref: 67770
culture collection no.: JCM 20245, ATCC 13621, IAM 1673
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |