Strain identifier
BacDive ID: 162782
Type strain: 
Species: Pantoea agglomerans
Strain history: IAM 1309 <-- ATCC 12287 <-- N. James ("Xanthomonas trifolii").
NCBI tax ID(s): 549 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 162782
keywords: 16S sequence, Bacteria, mesophilic
description: Pantoea agglomerans JCM 20143 is a mesophilic bacterium that was isolated from Plant.
NCBI tax id
- NCBI tax id: 549
- Matching level: species
strain history
- @ref: 67770
- history: IAM 1309 <-- ATCC 12287 <-- N. James ("Xanthomonas trifolii").
doi: 10.13145/bacdive162782.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Erwiniaceae
- genus: Pantoea
- species: Pantoea agglomerans
- full scientific name: Pantoea agglomerans (Beijerinck 1888) Gavini et al. 1989
synonyms
@ref synonym 20215 Bacillus agglomerans 20215 Bacillus milletiae 20215 Bacterium herbicola 20215 Enterobacter agglomerans 20215 Erwinia herbicola 20215 Erwinia milletiae
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Erwiniaceae
genus: Pantoea
species: Pantoea agglomerans
full scientific name: Pantoea agglomerans (Ewing and Fife 1972) Gavini et al. 1989
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Plant
taxonmaps
- @ref: 69479
- File name: preview.99_1960.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_310;97_507;98_583;99_1960&stattab=map
- Last taxonomy: Pantoea
- 16S sequence: LC595314
- Sequence Identity:
- Total samples: 1833
- soil counts: 48
- aquatic counts: 214
- animal counts: 1357
- plant counts: 214
Sequence information
16S sequences
- @ref: 67770
- description: Pantoea agglomerans JCM:20143 gene for 16S rRNA, partial sequence
- accession: LC595314
- length: 1402
- database: nuccore
- NCBI tax ID: 549
External links
@ref: 67770
culture collection no.: JCM 20143, ATCC 12287, IAM 1309
straininfo link
- @ref: 113598
- straininfo: 35525
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 113598 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID35525.1 |