Strain identifier
BacDive ID: 162653
Type strain: 
Species: Paraburkholderia ginsengiterrae
Strain history: D.-C. Yang and Y.-J. Kim DCY85.
NCBI tax ID(s): 1462993 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162653
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Paraburkholderia ginsengiterrae JCM 19888 is a mesophilic bacterium that was isolated from Rhizosphere of ginseng.
NCBI tax id
- NCBI tax id: 1462993
- Matching level: species
strain history
- @ref: 67770
- history: D.-C. Yang and Y.-J. Kim DCY85.
doi: 10.13145/bacdive162653.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Paraburkholderia
- species: Paraburkholderia ginsengiterrae
- full scientific name: Paraburkholderia ginsengiterrae (Farh et al. 2015) Dobritsa and Samadpour 2016
synonyms
@ref synonym 20215 Paraburkholderia panaciterrae 20215 Burkholderia panaciterrae 20215 Burkholderia ginsengiterrae
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Paraburkholderia
species: Paraburkholderia ginsengiterrae
full scientific name: Paraburkholderia ginsengiterrae (Farh et al. 2015) Dobritsa and Samadpour 2016
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Rhizosphere of ginseng
- geographic location: Gochang Province
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_5838.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_173;97_187;98_4340;99_5838&stattab=map
- Last taxonomy: Paraburkholderia ginsengiterrae
- 16S sequence: KF915802
- Sequence Identity:
- Total samples: 1169
- soil counts: 799
- aquatic counts: 31
- animal counts: 184
- plant counts: 155
Sequence information
16S sequences
- @ref: 67770
- description: Paraburkholderia ginsengiterrae strain DCY85 16S ribosomal RNA gene, partial sequence
- accession: KF915802
- length: 1453
- database: ena
- NCBI tax ID: 1462993
Genome sequences
- @ref: 67770
- description: Paraburkholderia ginsengiterrae DCY85
- accession: GCA_001645125
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1462993
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 76.687 | no |
| gram-positive | no | 98.193 | no |
| anaerobic | no | 98.957 | no |
| aerobic | yes | 87.713 | no |
| halophile | no | 95.321 | no |
| spore-forming | no | 93.869 | no |
| glucose-util | yes | 92.091 | no |
| motile | yes | 87.391 | no |
| thermophile | no | 99.45 | yes |
| glucose-ferment | no | 85.508 | no |
External links
@ref: 67770
culture collection no.: JCM 19888, KCTC 42054
literature
- topic: Phylogeny
- Pubmed-ID: 25537097
- title: Burkholderia ginsengiterrae sp. nov. and Burkholderia panaciterrae sp. nov., antagonistic bacteria against root rot pathogen Cylindrocarpon destructans, isolated from ginseng soil.
- authors: Farh Mel-A, Kim YJ, Van An H, Sukweenadhi J, Singh P, Huq MA, Yang DC
- journal: Arch Microbiol
- DOI: 10.1007/s00203-014-1075-y
- year: 2014
- mesh: Anti-Bacterial Agents/pharmacology, *Antibiosis, Base Composition, Burkholderia/*classification/drug effects/genetics/isolation & purification/*physiology, Fatty Acids/analysis, Genes, Bacterial/genetics, Molecular Sequence Data, Panax/*microbiology, Phospholipids/analysis, Phylogeny, Republic of Korea, *Soil Microbiology, Species Specificity
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |