Strain identifier
BacDive ID: 162567
Type strain: 
Species: Halocalculus aciditolerans
Strain history: H. Minegishi MH2-243-1.
NCBI tax ID(s): 1383812 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 162567
keywords: genome sequence, 16S sequence, Archaea, mesophilic, Gram-negative
description: Halocalculus aciditolerans JCM 19596 is a mesophilic, Gram-negative archaeon that was isolated from Solar salt in Japan.
NCBI tax id
- NCBI tax id: 1383812
- Matching level: species
strain history
- @ref: 67770
- history: H. Minegishi MH2-243-1.
doi: 10.13145/bacdive162567.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halocalculus
- species: Halocalculus aciditolerans
- full scientific name: Halocalculus aciditolerans Minegishi et al. 2015
@ref: 67770
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halocalculus
species: Halocalculus aciditolerans
full scientific name: Halocalculus aciditolerans Minegishi et al. 2015
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.917
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.98
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Solar salt in Japan
taxonmaps
- @ref: 69479
- File name: preview.99_189057.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17654;96_69757;97_90581;98_123114;99_189057&stattab=map
- Last taxonomy: Halocalculus aciditolerans subclade
- 16S sequence: AB844670
- Sequence Identity:
- Total samples: 9
- soil counts: 5
- aquatic counts: 4
Sequence information
16S sequences
- @ref: 67770
- description: Halocalculus aciditolerans gene for 16S ribosomal RNA, partial sequence, strain: MH2-243-1
- accession: AB844670
- length: 1473
- database: ena
- NCBI tax ID: 1383812
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halocalculus aciditolerans JCM 19596 | GCA_014647475 | contig | ncbi | 1383812 |
| 66792 | Halocalculus aciditolerans strain JCM 19596 | 1383812.3 | wgs | patric | 1383812 |
GC content
- @ref: 67770
- GC-content: 68.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 50 | no |
| motile | no | 78.278 | no |
| gram-positive | no | 97.891 | no |
| anaerobic | no | 95.651 | no |
| halophile | yes | 90.538 | no |
| spore-forming | no | 96.367 | no |
| glucose-util | yes | 83.009 | no |
| thermophile | no | 85.308 | yes |
| aerobic | yes | 86.689 | no |
| flagellated | no | 97.395 | no |
| glucose-ferment | no | 88.232 | no |
External links
@ref: 67770
culture collection no.: JCM 19596, KCTC 4149
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |