Strain identifier
BacDive ID: 162450
Type strain: 
Species: Vibrio salilacus
Strain history: Z.-P. Liu DSG-S6.
NCBI tax ID(s): 1323749 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 162450
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Vibrio salilacus JCM 19265 is a mesophilic, motile bacterium that was isolated from Dasugan Lake.
NCBI tax id
- NCBI tax id: 1323749
- Matching level: species
strain history
- @ref: 67770
- history: Z.-P. Liu DSG-S6.
doi: 10.13145/bacdive162450.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio salilacus
- full scientific name: Vibrio salilacus Zhong et al. 2015
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio salilacus
full scientific name: Vibrio salilacus Zhong et al. 2015
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 90.044 | |
| 69480 | 100 | negative |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 91.11
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Dasugan Lake
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Vibrio salilacus strain DSG-S6 16S ribosomal RNA gene, partial sequence
- accession: KC762315
- length: 1521
- database: nuccore
- NCBI tax ID: 1323749
Genome sequences
- @ref: 67770
- description: Vibrio salilacus DSG-S6
- accession: GCA_002811245
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1323749
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.533 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 51.01 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.11 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 99 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 90.044 | no |
External links
@ref: 67770
culture collection no.: JCM 19265, CGMCC 1.12427
literature
- topic: Phylogeny
- Pubmed-ID: 25964518
- title: Vibrio salilacus sp. nov., a new member of the Anguillarum clade with six alleles of the 16S rRNA gene from a saline lake.
- authors: Zhong ZP, Liu Y, Liu HC, Wang F, Zhou YG, Liu ZP
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000316
- year: 2015
- mesh: Alleles, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Lakes/*microbiology, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, Sodium Chloride/analysis, Vibrio/*classification/genetics/isolation & purification
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |